package com.se.nsl.utils; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.HDF5GroupInfo; import hdf.hdf5lib.HDFArray; import hdf.hdf5lib.callbacks.H5A_iterate_cb; import hdf.hdf5lib.callbacks.H5A_iterate_t; import hdf.hdf5lib.callbacks.H5D_iterate_cb; import hdf.hdf5lib.callbacks.H5D_iterate_t; import hdf.hdf5lib.callbacks.H5E_walk_cb; import hdf.hdf5lib.callbacks.H5E_walk_t; import hdf.hdf5lib.callbacks.H5L_iterate_cb; import hdf.hdf5lib.callbacks.H5L_iterate_t; import hdf.hdf5lib.callbacks.H5O_iterate_cb; import hdf.hdf5lib.callbacks.H5O_iterate_t; import hdf.hdf5lib.callbacks.H5P_iterate_cb; import hdf.hdf5lib.callbacks.H5P_iterate_t; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5JavaException; import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.structs.H5AC_cache_config_t; import hdf.hdf5lib.structs.H5A_info_t; import hdf.hdf5lib.structs.H5F_info_t; import hdf.hdf5lib.structs.H5G_info_t; import hdf.hdf5lib.structs.H5L_info_t; import hdf.hdf5lib.structs.H5O_info_t; import java.io.File; import java.io.Serializable; import java.nio.ByteBuffer; import java.util.Collection; import java.util.LinkedHashSet; import org.slf4j.Logger; import org.slf4j.LoggerFactory; public class H5 implements Serializable { private static final long serialVersionUID = 6129888282117053288L; private static final Logger log = LoggerFactory.getLogger(H5.class); public static final int[] LIB_VERSION = new int[]{1, 8, 19}; public static final String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib"; public static final String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName"; private static String s_libraryName; private static boolean isLibraryLoaded = false; private static final boolean IS_CRITICAL_PINNING = true; private static final LinkedHashSet OPEN_IDS = new LinkedHashSet(); public H5() { } public static void loadH5Lib() { if (!isLibraryLoaded) { // System.setProperty("hdf.hdf5lib.H5.loadLibraryName", "hdf5"); s_libraryName = System.getProperty("hdf.hdf5lib.H5.loadLibraryName", (String)null); String var0 = null; if (s_libraryName != null && s_libraryName.length() > 0) { try { var0 = System.mapLibraryName(s_libraryName); System.loadLibrary(s_libraryName); isLibraryLoaded = true; } catch (Throwable var30) { var30.printStackTrace(); isLibraryLoaded = false; } finally { log.info("HDF5 library: " + s_libraryName); log.debug(" resolved to: " + var0 + "; "); log.info((isLibraryLoaded ? "" : " NOT") + " successfully loaded from system property"); } } if (!isLibraryLoaded) { String var1 = System.getProperty("hdf.hdf5lib.H5.hdf5lib", (String)null); if (var1 != null && var1.length() > 0) { File var2 = new File(var1); if (!var2.exists() || !var2.canRead() || !var2.isFile()) { isLibraryLoaded = false; throw new UnsatisfiedLinkError("Invalid HDF5 library, " + var1); } try { System.load(var1); isLibraryLoaded = true; } catch (Throwable var29) { var29.printStackTrace(); isLibraryLoaded = false; } finally { log.info("HDF5 library: "); log.debug(var1); log.info((isLibraryLoaded ? "" : " NOT") + " successfully loaded."); } } } if (!isLibraryLoaded) { try { s_libraryName = "jhdf5"; var0 = System.mapLibraryName(s_libraryName); System.loadLibrary("jhdf5"); isLibraryLoaded = true; } catch (Throwable var28) { var28.printStackTrace(); isLibraryLoaded = false; } finally { log.info("HDF5 library: " + s_libraryName); log.debug(" resolved to: " + var0 + "; "); log.info((isLibraryLoaded ? "" : " NOT") + " successfully loaded from java.library.path"); } } try { H5dont_atexit(); } catch (HDF5LibraryException var27) { System.exit(1); } if (!log.isDebugEnabled()) { H5error_off(); } Integer var34 = Integer.getInteger("hdf.hdf5lib.H5.hdf5maj", (Integer)null); Integer var35 = Integer.getInteger("hdf.hdf5lib.H5.hdf5min", (Integer)null); Integer var3 = Integer.getInteger("hdf.hdf5lib.H5.hdf5rel", (Integer)null); if (var34 != null && var35 != null && var3 != null) { H5check_version(var34, var35, var3); } } } public static final int getOpenIDCount() { return OPEN_IDS.size(); } /** @deprecated */ @Deprecated public static final int getOpenID(int var0) { byte var1 = -1; return var1; } public static final Collection getOpenIDs() { return OPEN_IDS; } public static synchronized native int H5check_version(int var0, int var1, int var2); public static synchronized native int H5close() throws HDF5LibraryException; public static synchronized native int H5open() throws HDF5LibraryException; private static synchronized native int H5dont_atexit() throws HDF5LibraryException; public static synchronized native int H5error_off(); public static synchronized native int H5garbage_collect() throws HDF5LibraryException; public static synchronized native int H5get_libversion(int[] var0) throws HDF5LibraryException; public static synchronized native int H5set_free_list_limits(int var0, int var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException; public static synchronized native void H5export_dataset(String var0, String var1, String var2, int var3) throws HDF5LibraryException; private static synchronized native boolean H5is_library_threadsafe(); public static int H5Aclose(int var0) throws HDF5LibraryException { if (var0 < 0) { return 0; } else { log.trace("OPEN_IDS: H5Aclose remove {}", var0); OPEN_IDS.remove(var0); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); return _H5Aclose(var0); } } private static synchronized native int _H5Aclose(int var0) throws HDF5LibraryException; public static synchronized native int H5Acopy(int var0, int var1) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static int H5Acreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException { int var5 = _H5Acreate(var0, var1, var2, var3, var4); if (var5 > 0) { log.trace("OPEN_IDS: H5A add {}", var5); OPEN_IDS.add(var5); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var5; } private static synchronized native int _H5Acreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException; public static int H5Acreate(int var0, String var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException, NullPointerException { int var6 = _H5Acreate2(var0, var1, var2, var3, var4, var5); if (var6 > 0) { log.trace("OPEN_IDS: H5A create add {}", var6); OPEN_IDS.add(var6); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var6; } private static synchronized native int _H5Acreate2(int var0, String var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException, NullPointerException; public static int H5Acreate_by_name(int var0, String var1, String var2, int var3, int var4, int var5, int var6, int var7) throws HDF5LibraryException, NullPointerException { int var8 = _H5Acreate_by_name(var0, var1, var2, var3, var4, var5, var6, var7); if (var8 > 0) { log.trace("OPEN_IDS: H5Acreate_by_name add {}", var8); OPEN_IDS.add(var8); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var8; } private static synchronized native int _H5Acreate_by_name(int var0, String var1, String var2, int var3, int var4, int var5, int var6, int var7) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Adelete(int var0, String var1) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Adelete_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Adelete_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Aexists(int var0, String var1) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Aexists_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException; public static synchronized native H5A_info_t H5Aget_info(int var0) throws HDF5LibraryException; public static synchronized native H5A_info_t H5Aget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native H5A_info_t H5Aget_info_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException; public static synchronized native String H5Aget_name(int var0) throws HDF5LibraryException; public static synchronized native String H5Aget_name_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native int H5Aget_num_attrs(int var0) throws HDF5LibraryException; public static int H5Aget_space(int var0) throws HDF5LibraryException { int var1 = _H5Aget_space(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Aget_space add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Aget_space(int var0) throws HDF5LibraryException; public static synchronized native long H5Aget_storage_size(int var0) throws HDF5LibraryException; public static int H5Aget_type(int var0) throws HDF5LibraryException { int var1 = _H5Aget_type(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Aget_type add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Aget_type(int var0) throws HDF5LibraryException; public static int H5Aopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException { int var3 = _H5Aopen(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Aopen add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Aopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static int H5Aopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6, int var7) throws HDF5LibraryException, NullPointerException { int var8 = _H5Aopen_by_idx(var0, var1, var2, var3, var4, var6, var7); if (var8 > 0) { log.trace("OPEN_IDS: H5Aopen_by_idx add {}", var8); OPEN_IDS.add(var8); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var8; } private static synchronized native int _H5Aopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6, int var7) throws HDF5LibraryException, NullPointerException; public static int H5Aopen_by_name(int var0, String var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException { int var5 = _H5Aopen_by_name(var0, var1, var2, var3, var4); if (var5 > 0) { log.trace("OPEN_IDS: H5Aopen_by_name add {}", var5); OPEN_IDS.add(var5); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var5; } private static synchronized native int _H5Aopen_by_name(int var0, String var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static int H5Aopen_idx(int var0, int var1) throws HDF5LibraryException { int var2 = _H5Aopen_idx(var0, var1); if (var2 > 0) { log.trace("OPEN_IDS: H5A add {}", var2); OPEN_IDS.add(var2); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var2; } private static synchronized native int _H5Aopen_idx(int var0, int var1) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static int H5Aopen_name(int var0, String var1) throws HDF5LibraryException, NullPointerException { int var2 = _H5Aopen_name(var0, var1); if (var2 > 0) { log.trace("OPEN_IDS: H5A add {}", var2); OPEN_IDS.add(var2); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var2; } private static synchronized native int _H5Aopen_name(int var0, String var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Aread(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Aread(int var0, int var1, Object var2) throws HDF5Exception, NullPointerException { HDFArray var3 = new HDFArray(var2); byte[] var4 = var3.emptyBytes(); int var5 = H5Aread(var0, var1, var4); if (var5 >= 0) { var3.arrayify(var4); } return var5; } public static synchronized native int H5AreadVL(int var0, int var1, String[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5AreadComplex(int var0, int var1, String[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Arename(int var0, String var1, String var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Arename_by_name(int var0, String var1, String var2, String var3, int var4) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Awrite(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Awrite(int var0, int var1, Object var2) throws HDF5Exception, NullPointerException { HDFArray var3 = new HDFArray(var2); byte[] var4 = var3.byteify(); int var5 = H5Awrite(var0, var1, var4); Object var6 = null; var3 = null; return var5; } public static synchronized native int H5AwriteVL(int var0, int var1, String[] var2) throws HDF5LibraryException, NullPointerException; public static int H5Aget_create_plist(int var0) throws HDF5LibraryException { int var1 = _H5Aget_create_plist(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Aget_create_plist add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Aget_create_plist(int var0) throws HDF5LibraryException; public static synchronized native int H5Aiterate(int var0, int var1, int var2, long var3, H5A_iterate_cb var5, H5A_iterate_t var6) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Aiterate_by_name(int var0, String var1, int var2, int var3, long var4, H5A_iterate_cb var6, H5A_iterate_t var7, int var8) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Dcopy(int var0, int var1) throws HDF5LibraryException; public static int H5Dclose(int var0) throws HDF5LibraryException { if (var0 < 0) { return 0; } else { log.trace("OPEN_IDS: H5Dclose remove {}", var0); OPEN_IDS.remove(var0); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); return _H5Dclose(var0); } } private static synchronized native int _H5Dclose(int var0) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static int H5Dcreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException { int var5 = _H5Dcreate(var0, var1, var2, var3, var4); if (var5 > 0) { log.trace("OPEN_IDS: H5D add {}", var5); OPEN_IDS.add(var5); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var5; } private static synchronized native int _H5Dcreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException; public static int H5Dcreate(int var0, String var1, int var2, int var3, int var4, int var5, int var6) throws HDF5LibraryException, NullPointerException { int var7 = _H5Dcreate2(var0, var1, var2, var3, var4, var5, var6); if (var7 > 0) { log.trace("OPEN_IDS: H5Dcreate add {}", var7); OPEN_IDS.add(var7); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var7; } private static synchronized native int _H5Dcreate2(int var0, String var1, int var2, int var3, int var4, int var5, int var6) throws HDF5LibraryException, NullPointerException; public static int H5Dcreate_anon(int var0, int var1, int var2, int var3, int var4) throws HDF5LibraryException { int var5 = _H5Dcreate_anon(var0, var1, var2, var3, var4); if (var5 > 0) { log.trace("OPEN_IDS: H5Dcreate_anon add {}", var5); OPEN_IDS.add(var5); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var5; } private static synchronized native int _H5Dcreate_anon(int var0, int var1, int var2, int var3, int var4) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static synchronized native int H5Dextend(int var0, byte[] var1) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized int H5Dextend(int var0, long[] var1) throws HDF5Exception, NullPointerException { boolean var2 = true; HDFArray var3 = new HDFArray(var1); byte[] var4 = var3.byteify(); int var5 = H5Dextend(var0, var4); Object var6 = null; var3 = null; return var5; } public static synchronized native void H5Dfill(byte[] var0, int var1, byte[] var2, int var3, int var4) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Dget_access_plist(int var0) throws HDF5LibraryException; public static int H5Dget_create_plist(int var0) throws HDF5LibraryException { int var1 = _H5Dget_create_plist(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Dget_create_plist add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Dget_create_plist(int var0) throws HDF5LibraryException; public static synchronized native long H5Dget_offset(int var0) throws HDF5LibraryException; public static int H5Dget_space(int var0) throws HDF5LibraryException { int var1 = _H5Dget_space(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Dget_space add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Dget_space(int var0) throws HDF5LibraryException; public static synchronized native int H5Dget_space_status(int var0) throws HDF5LibraryException; public static int H5Dget_space_status(int var0, int[] var1) throws HDF5LibraryException, NullPointerException { return _H5Dget_space_status(var0, var1); } private static synchronized native int _H5Dget_space_status(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native long H5Dget_storage_size(int var0) throws HDF5LibraryException, IllegalArgumentException; public static int H5Dget_type(int var0) throws HDF5LibraryException { int var1 = _H5Dget_type(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Dget_type add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Dget_type(int var0) throws HDF5LibraryException; public static synchronized native int H5Diterate(byte[] var0, int var1, int var2, H5D_iterate_cb var3, H5D_iterate_t var4) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static int H5Dopen(int var0, String var1) throws HDF5LibraryException, NullPointerException { int var2 = _H5Dopen(var0, var1); if (var2 > 0) { log.trace("OPEN_IDS: H5D add {}", var2); OPEN_IDS.add(var2); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var2; } private static synchronized native int _H5Dopen(int var0, String var1) throws HDF5LibraryException, NullPointerException; public static int H5Dopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException { int var3 = _H5Dopen2(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Dopen add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Dopen2(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Dread(int var0, int var1, int var2, int var3, int var4, byte[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dread(int var0, int var1, int var2, int var3, int var4, byte[] var5) throws HDF5LibraryException, NullPointerException { return H5Dread(var0, var1, var2, var3, var4, var5, true); } public static synchronized int H5Dread(int var0, int var1, int var2, int var3, int var4, Object var5) throws HDF5Exception, HDF5LibraryException, NullPointerException { return H5Dread(var0, var1, var2, var3, var4, var5, true); } public static synchronized int H5Dread(int var0, int var1, int var2, int var3, int var4, Object var5, boolean var6) throws HDF5Exception, HDF5LibraryException, NullPointerException { boolean var7 = true; boolean var8 = false; Class var9 = var5.getClass(); if (!var9.isArray()) { throw new HDF5JavaException("H5Dread: data is not an array"); } else { String var10 = var9.getName(); var8 = var10.lastIndexOf(91) == var10.indexOf(91); char var11 = var10.charAt(var10.lastIndexOf("[") + 1); log.trace("H5Dread: cname={} is1D={} dname={}", new Object[]{var10, var8, var11}); int var14; if (var8 && var11 == 'B') { log.trace("H5Dread_dname_B"); var14 = H5Dread(var0, var1, var2, var3, var4, (byte[])((byte[])var5), var6); } else if (var8 && var11 == 'S') { log.trace("H5Dread_dname_S"); var14 = H5Dread_short(var0, var1, var2, var3, var4, (short[])((short[])var5), var6); } else if (var8 && var11 == 'I') { log.trace("H5Dread_dname_I"); var14 = H5Dread_int(var0, var1, var2, var3, var4, (int[])((int[])var5), var6); } else if (var8 && var11 == 'J') { log.trace("H5Dread_dname_J"); var14 = H5Dread_long(var0, var1, var2, var3, var4, (long[])((long[])var5)); } else if (var8 && var11 == 'F') { log.trace("H5Dread_dname_F"); var14 = H5Dread_float(var0, var1, var2, var3, var4, (float[])((float[])var5), var6); } else if (var8 && var11 == 'D') { log.trace("H5Dread_dname_D"); var14 = H5Dread_double(var0, var1, var2, var3, var4, (double[])((double[])var5), var6); } else if (H5Tequal(var1, HDF5Constants.H5T_STD_REF_DSETREG)) { log.trace("H5Dread_reg_ref"); var14 = H5Dread_reg_ref(var0, var1, var2, var3, var4, (String[])((String[])var5)); } else if (var8 && var9.getComponentType() == String.class) { log.trace("H5Dread_string type"); if (H5Tis_variable_str(var1)) { var14 = H5DreadVL(var0, var1, var2, var3, var4, (Object[])((Object[])var5)); } else { var14 = H5Dread_string(var0, var1, var2, var3, var4, (String[])((String[])var5)); } } else { HDFArray var12 = new HDFArray(var5); byte[] var13 = var12.emptyBytes(); log.trace("H5Dread_else"); var14 = H5Dread(var0, var1, var2, var3, var4, var13, var6); if (var14 >= 0) { var12.arrayify(var13); } Object var15 = null; var12 = null; } return var14; } } public static synchronized native int H5Dread_double(int var0, int var1, int var2, int var3, int var4, double[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dread_double(int var0, int var1, int var2, int var3, int var4, double[] var5) throws HDF5LibraryException, NullPointerException { return H5Dread_double(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5Dread_float(int var0, int var1, int var2, int var3, int var4, float[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dread_float(int var0, int var1, int var2, int var3, int var4, float[] var5) throws HDF5LibraryException, NullPointerException { return H5Dread_float(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5Dread_int(int var0, int var1, int var2, int var3, int var4, int[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dread_int(int var0, int var1, int var2, int var3, int var4, int[] var5) throws HDF5LibraryException, NullPointerException { return H5Dread_int(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5Dread_long(int var0, int var1, int var2, int var3, int var4, long[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dread_long(int var0, int var1, int var2, int var3, int var4, long[] var5) throws HDF5LibraryException, NullPointerException { return H5Dread_long(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5Dread_reg_ref(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Dread_reg_ref_data(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Dread_short(int var0, int var1, int var2, int var3, int var4, short[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dread_short(int var0, int var1, int var2, int var3, int var4, short[] var5) throws HDF5LibraryException, NullPointerException { return H5Dread_short(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5Dread_string(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5DreadVL(int var0, int var1, int var2, int var3, int var4, Object[] var5) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Dset_extent(int var0, long[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Dvlen_get_buf_size(int var0, int var1, int var2, int[] var3) throws HDF5LibraryException; public static synchronized native long H5Dvlen_get_buf_size_long(int var0, int var1, int var2) throws HDF5LibraryException; public static synchronized native int H5Dvlen_reclaim(int var0, int var1, int var2, byte[] var3) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Dwrite(int var0, int var1, int var2, int var3, int var4, byte[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dwrite(int var0, int var1, int var2, int var3, int var4, byte[] var5) throws HDF5LibraryException, NullPointerException { return H5Dwrite(var0, var1, var2, var3, var4, var5, true); } public static synchronized int H5Dwrite(int var0, int var1, int var2, int var3, int var4, Object var5) throws HDF5Exception, HDF5LibraryException, NullPointerException { return H5Dwrite(var0, var1, var2, var3, var4, var5, true); } public static synchronized int H5Dwrite(int var0, int var1, int var2, int var3, int var4, Object var5, boolean var6) throws HDF5Exception, HDF5LibraryException, NullPointerException { boolean var7 = true; boolean var8 = false; Class var9 = var5.getClass(); if (!var9.isArray()) { throw new HDF5JavaException("H5Dread: data is not an array"); } else { String var10 = var9.getName(); var8 = var10.lastIndexOf(91) == var10.indexOf(91); char var11 = var10.charAt(var10.lastIndexOf("[") + 1); int var14; if (var8 && var11 == 'B') { var14 = H5Dwrite(var0, var1, var2, var3, var4, (byte[])((byte[])var5), var6); } else if (var8 && var11 == 'S') { var14 = H5Dwrite_short(var0, var1, var2, var3, var4, (short[])((short[])var5), var6); } else if (var8 && var11 == 'I') { var14 = H5Dwrite_int(var0, var1, var2, var3, var4, (int[])((int[])var5), var6); } else if (var8 && var11 == 'J') { var14 = H5Dwrite_long(var0, var1, var2, var3, var4, (long[])((long[])var5), var6); } else if (var8 && var11 == 'F') { var14 = H5Dwrite_float(var0, var1, var2, var3, var4, (float[])((float[])var5), var6); } else if (var8 && var11 == 'D') { var14 = H5Dwrite_double(var0, var1, var2, var3, var4, (double[])((double[])var5), var6); } else if (H5Tget_class(var1) == HDF5Constants.H5T_STRING && H5Tis_variable_str(var1) && var9.isArray() && var9.getComponentType() == String.class && var8) { var14 = H5DwriteString(var0, var1, var2, var3, var4, (String[])((String[])var5)); } else { HDFArray var12 = new HDFArray(var5); byte[] var13 = var12.byteify(); var14 = H5Dwrite(var0, var1, var2, var3, var4, var13, var6); Object var15 = null; var12 = null; } return var14; } } public static synchronized native int H5Dwrite_double(int var0, int var1, int var2, int var3, int var4, double[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dwrite_double(int var0, int var1, int var2, int var3, int var4, double[] var5) throws HDF5LibraryException, NullPointerException { return H5Dwrite_double(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5Dwrite_float(int var0, int var1, int var2, int var3, int var4, float[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dwrite_float(int var0, int var1, int var2, int var3, int var4, float[] var5) throws HDF5LibraryException, NullPointerException { return H5Dwrite_float(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5Dwrite_int(int var0, int var1, int var2, int var3, int var4, int[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dwrite_int(int var0, int var1, int var2, int var3, int var4, int[] var5) throws HDF5LibraryException, NullPointerException { return H5Dwrite_int(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5Dwrite_long(int var0, int var1, int var2, int var3, int var4, long[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dwrite_long(int var0, int var1, int var2, int var3, int var4, long[] var5) throws HDF5LibraryException, NullPointerException { return H5Dwrite_long(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5Dwrite_short(int var0, int var1, int var2, int var3, int var4, short[] var5, boolean var6) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Dwrite_short(int var0, int var1, int var2, int var3, int var4, short[] var5) throws HDF5LibraryException, NullPointerException { return H5Dwrite_short(var0, var1, var2, var3, var4, var5, true); } public static synchronized native int H5DwriteString(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Eauto_is_v2(int var0) throws HDF5LibraryException; public static int H5Eclear() throws HDF5LibraryException { H5Eclear2(HDF5Constants.H5E_DEFAULT); return 0; } public static void H5Eclear(int var0) throws HDF5LibraryException { H5Eclear2(var0); } public static synchronized native void H5Eclear2(int var0) throws HDF5LibraryException; public static synchronized native void H5Eclose_msg(int var0) throws HDF5LibraryException; public static synchronized native void H5Eclose_stack(int var0) throws HDF5LibraryException; public static synchronized native int H5Ecreate_msg(int var0, int var1, String var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Ecreate_stack() throws HDF5LibraryException; public static synchronized native String H5Eget_class_name(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Eget_current_stack() throws HDF5LibraryException; public static synchronized native void H5Eset_current_stack(int var0) throws HDF5LibraryException; public static synchronized native String H5Eget_msg(int var0, int[] var1) throws HDF5LibraryException; public static synchronized native long H5Eget_num(int var0) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native void H5Eprint1(Object var0) throws HDF5LibraryException; public static synchronized native void H5Eprint2(int var0, Object var1) throws HDF5LibraryException; public static synchronized native void H5Epop(int var0, long var1) throws HDF5LibraryException; public static void H5Epush(int var0, String var1, String var2, int var3, int var4, int var5, int var6, String var7) throws HDF5LibraryException, NullPointerException { H5Epush2(var0, var1, var2, var3, var4, var5, var6, var7); } public static synchronized native void H5Epush2(int var0, String var1, String var2, int var3, int var4, int var5, int var6, String var7) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Eregister_class(String var0, String var1, String var2) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Eunregister_class(int var0) throws HDF5LibraryException; public static void H5Ewalk(int var0, int var1, H5E_walk_cb var2, H5E_walk_t var3) throws HDF5LibraryException, NullPointerException { H5Ewalk2(var0, var1, var2, var3); } public static synchronized native void H5Ewalk2(int var0, int var1, H5E_walk_cb var2, H5E_walk_t var3) throws HDF5LibraryException, NullPointerException; public static int H5Fclose(int var0) throws HDF5LibraryException { if (var0 < 0) { return 0; } else { log.trace("OPEN_IDS: H5Fclose remove {}", var0); OPEN_IDS.remove(var0); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); return _H5Fclose(var0); } } private static synchronized native int _H5Fclose(int var0) throws HDF5LibraryException; public static int H5Fopen(String var0, int var1, int var2) throws HDF5LibraryException, NullPointerException { int var3 = _H5Fopen(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Fopen add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Fopen(String var0, int var1, int var2) throws HDF5LibraryException, NullPointerException; public static int H5Freopen(int var0) throws HDF5LibraryException { int var1 = _H5Freopen(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Freopen add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Freopen(int var0) throws HDF5LibraryException; public static int H5Fcreate(String var0, int var1, int var2, int var3) throws HDF5LibraryException, NullPointerException { int var4 = _H5Fcreate(var0, var1, var2, var3); if (var4 > 0) { log.trace("OPEN_IDS: H5Fcreate add {}", var4); OPEN_IDS.add(var4); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var4; } private static synchronized native int _H5Fcreate(String var0, int var1, int var2, int var3) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Fflush(int var0, int var1) throws HDF5LibraryException; public static int H5Fget_access_plist(int var0) throws HDF5LibraryException { int var1 = _H5Fget_access_plist(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Fget_access_plist add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Fget_access_plist(int var0) throws HDF5LibraryException; public static int H5Fget_create_plist(int var0) throws HDF5LibraryException { int var1 = _H5Fget_create_plist(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Fget_create_plist add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Fget_create_plist(int var0) throws HDF5LibraryException; public static synchronized native long H5Fget_filesize(int var0) throws HDF5LibraryException; public static synchronized native long H5Fget_freespace(int var0) throws HDF5LibraryException; public static synchronized native int H5Fget_intent(int var0) throws HDF5LibraryException; public static synchronized native double H5Fget_mdc_hit_rate(int var0) throws HDF5LibraryException; public static synchronized native int H5Fget_mdc_size(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native String H5Fget_name(int var0) throws HDF5LibraryException; public static synchronized native String H5Fget_name(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Fget_obj_count(int var0, int var1) throws HDF5LibraryException; public static synchronized native long H5Fget_obj_count_long(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Fget_obj_ids(int var0, int var1, int var2, int[] var3) throws HDF5LibraryException, NullPointerException; public static synchronized native long H5Fget_obj_ids_long(int var0, int var1, long var2, int[] var4) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Fis_hdf5(String var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Fmount(int var0, String var1, int var2, int var3) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Funmount(int var0, String var1) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Freset_mdc_hit_rate_stats(int var0) throws HDF5LibraryException; public static synchronized native H5F_info_t H5Fget_info(int var0) throws HDF5LibraryException; public static synchronized native void H5Fclear_elink_file_cache(int var0) throws HDF5LibraryException; public static int H5Gclose(int var0) throws HDF5LibraryException { if (var0 < 0) { return 0; } else { log.trace("OPEN_IDS: H5Gclose remove {}", var0); OPEN_IDS.remove(var0); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); return _H5Gclose(var0); } } private static synchronized native int _H5Gclose(int var0) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static int H5Gcreate(int var0, String var1, long var2) throws HDF5LibraryException, NullPointerException { int var4 = _H5Gcreate(var0, var1, var2); if (var4 > 0) { log.trace("OPEN_IDS: H5Gcreate add {}", var4); OPEN_IDS.add(var4); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var4; } private static synchronized native int _H5Gcreate(int var0, String var1, long var2) throws HDF5LibraryException, NullPointerException; public static int H5Gcreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException { int var5 = _H5Gcreate2(var0, var1, var2, var3, var4); if (var5 > 0) { log.trace("OPEN_IDS: H5Gcreate add {}", var5); OPEN_IDS.add(var5); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var5; } private static synchronized native int _H5Gcreate2(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException; public static int H5Gcreate_anon(int var0, int var1, int var2) throws HDF5LibraryException { int var3 = _H5Gcreate_anon(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Gcreate_anon add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Gcreate_anon(int var0, int var1, int var2) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static synchronized native int H5Gget_comment(int var0, String var1, int var2, String[] var3) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException, IllegalArgumentException; /** @deprecated */ @Deprecated public static synchronized native int H5Gset_comment(int var0, String var1, String var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Gget_create_plist(int var0) throws HDF5LibraryException; public static synchronized native H5G_info_t H5Gget_info(int var0) throws HDF5LibraryException; public static synchronized native H5G_info_t H5Gget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native H5G_info_t H5Gget_info_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native int H5Gget_linkval(int var0, String var1, int var2, String[] var3) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException, IllegalArgumentException; /** @deprecated */ @Deprecated public static synchronized native int H5Gget_num_objs(int var0, long[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Gget_obj_info_all(int var0, String var1, String[] var2, int[] var3, long[] var4) throws HDF5LibraryException, NullPointerException { if (var2 == null) { throw new NullPointerException("H5Gget_obj_info_all(): name array is null"); } else { return H5Gget_obj_info_all(var0, var1, var2, var3, (int[])null, (long[])null, var4, HDF5Constants.H5_INDEX_NAME); } } public static synchronized int H5Gget_obj_info_all(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, int var6) throws HDF5LibraryException, NullPointerException { return H5Gget_obj_info_full(var0, var1, var2, var3, var4, (long[])null, var5, var6, -1); } public static synchronized int H5Gget_obj_info_all(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, long[] var6, int var7) throws HDF5LibraryException, NullPointerException { return H5Gget_obj_info_full(var0, var1, var2, var3, var4, var5, var6, var2.length, var7, -1); } public static synchronized int H5Gget_obj_info_full(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, long[] var6, int var7, int var8) throws HDF5LibraryException, NullPointerException { if (var2 == null) { throw new NullPointerException("H5Gget_obj_info_full(): name array is null"); } else if (var3 == null) { throw new NullPointerException("H5Gget_obj_info_full(): object type array is null"); } else if (var2.length == 0) { throw new HDF5LibraryException("H5Gget_obj_info_full(): array size is zero"); } else if (var2.length != var3.length) { throw new HDF5LibraryException("H5Gget_obj_info_full(): name and type array sizes are different"); } else { if (var4 == null) { var4 = new int[var3.length]; } if (var5 == null) { var5 = new long[var6.length]; } if (var7 < 0) { var7 = HDF5Constants.H5_INDEX_NAME; } if (var8 < 0) { var8 = HDF5Constants.H5_ITER_INC; } log.trace("H5Gget_obj_info_full: oname_len={}", var2.length); int var9 = H5Gget_obj_info_full(var0, var1, var2, var3, var4, var5, var6, var2.length, var7, var8); for(int var10 = 0; var10 < var2.length; ++var10) { log.trace("H5Gget_obj_info_full: oname={}", var2[var10]); } return var9; } } private static synchronized native int H5Gget_obj_info_full(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, long[] var6, int var7, int var8, int var9) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Gget_obj_info_idx(int var0, String var1, int var2, String[] var3, int[] var4) throws HDF5LibraryException, NullPointerException { long var5 = 4096L; String[] var7 = new String[]{new String("")}; int var8 = H5Gopen(var0, var1); long var9 = H5Gget_objname_by_idx(var8, (long)var2, var7, var5); int var11 = H5Gget_objtype_by_idx(var8, (long)var2); var3[0] = new String(var7[0]); var4[0] = var11; int var12 = (new Long(var9)).intValue(); return var12; } public static synchronized int H5Gget_obj_info_max(int var0, String[] var1, int[] var2, int[] var3, long[] var4, int var5) throws HDF5LibraryException, NullPointerException { if (var1 == null) { throw new NullPointerException("H5Gget_obj_info_max(): name array is null"); } else if (var2 == null) { throw new NullPointerException("H5Gget_obj_info_max(): object type array is null"); } else if (var3 == null) { throw new NullPointerException("H5Gget_obj_info_max(): link type array is null"); } else if (var1.length <= 0) { throw new HDF5LibraryException("H5Gget_obj_info_max(): array size is zero"); } else if (var5 <= 0) { throw new HDF5LibraryException("H5Gget_obj_info_max(): maximum array size is zero"); } else if (var1.length != var2.length) { throw new HDF5LibraryException("H5Gget_obj_info_max(): name and type array sizes are different"); } else { return H5Gget_obj_info_max(var0, var1, var2, var3, var4, var5, var1.length); } } private static synchronized native int H5Gget_obj_info_max(int var0, String[] var1, int[] var2, int[] var3, long[] var4, int var5, int var6) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native int H5Gget_objinfo(int var0, String var1, boolean var2, long[] var3, long[] var4, int[] var5, long[] var6) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; /** @deprecated */ @Deprecated public static synchronized int H5Gget_objinfo(int var0, String var1, boolean var2, HDF5GroupInfo var3) throws HDF5LibraryException, NullPointerException { boolean var4 = true; long[] var5 = new long[2]; long[] var6 = new long[2]; int[] var7 = new int[3]; long[] var8 = new long[1]; int var9 = H5Gget_objinfo(var0, var1, var2, var5, var6, var7, var8); if (var9 >= 0) { var3.setGroupInfo(var5, var6, var7[0], var7[1], var8[0], var7[2]); } return var9; } /** @deprecated */ @Deprecated public static synchronized native long H5Gget_objname_by_idx(int var0, long var1, String[] var3, long var4) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native int H5Gget_objtype_by_idx(int var0, long var1) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static synchronized native int H5Glink(int var0, int var1, String var2, String var3) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native int H5Glink2(int var0, String var1, int var2, int var3, String var4) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native int H5Gunlink(int var0, String var1) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native int H5Gmove(int var0, String var1, String var2) throws HDF5LibraryException, NullPointerException; public static synchronized long H5Gn_members_long(int var0, String var1) throws HDF5LibraryException, NullPointerException { int var2 = H5Gopen(var0, var1); long var3 = -1L; try { H5G_info_t var5 = H5Gget_info(var2); var3 = var5.nlinks; } finally { H5Gclose(var2); } return var3; } public static synchronized int H5Gn_members(int var0, String var1) throws HDF5LibraryException, NullPointerException { return (int)H5Gn_members_long(var0, var1); } /** @deprecated */ @Deprecated public static int H5Gopen(int var0, String var1) throws HDF5LibraryException, NullPointerException { int var2 = _H5Gopen(var0, var1); if (var2 > 0) { log.trace("OPEN_IDS: H5G add {}", var2); OPEN_IDS.add(var2); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var2; } private static synchronized native int _H5Gopen(int var0, String var1) throws HDF5LibraryException, NullPointerException; public static int H5Gopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException { int var3 = _H5Gopen2(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Gopen add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Gopen2(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Iget_file_id(int var0) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static synchronized native long H5Iget_name_long(int var0, String[] var1, long var2) throws HDF5LibraryException, NullPointerException; public static synchronized native String H5Iget_name(int var0) throws HDF5LibraryException; public static synchronized native int H5Iget_ref(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Idec_ref(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Iinc_ref(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Iget_type(int var0) throws HDF5LibraryException; public static synchronized native int H5Iget_type_ref(int var0) throws HDF5LibraryException; public static synchronized native int H5Idec_type_ref(int var0) throws HDF5LibraryException; public static synchronized native int H5Iinc_type_ref(int var0) throws HDF5LibraryException; public static synchronized native int H5Inmembers(int var0) throws HDF5LibraryException; public static synchronized native boolean H5Iis_valid(int var0) throws HDF5LibraryException; public static synchronized native boolean H5Itype_exists(int var0) throws HDF5LibraryException; public static synchronized native void H5Iclear_type(int var0, boolean var1) throws HDF5LibraryException; public static synchronized native void H5Idestroy_type(int var0) throws HDF5LibraryException; public static synchronized native void H5Lcopy(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Lcreate_external(String var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Lcreate_hard(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Lcreate_soft(String var0, int var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Ldelete(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Ldelete_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Lexists(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native H5L_info_t H5Lget_info(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native H5L_info_t H5Lget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native String H5Lget_name_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Lget_val(int var0, String var1, String[] var2, int var3) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Lget_val_by_idx(int var0, String var1, int var2, int var3, long var4, String[] var6, int var7) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Literate(int var0, int var1, int var2, long var3, H5L_iterate_cb var5, H5L_iterate_t var6) throws HDF5LibraryException; public static synchronized native int H5Literate_by_name(int var0, String var1, int var2, int var3, long var4, H5L_iterate_cb var6, H5L_iterate_t var7, int var8) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Lmove(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Lvisit(int var0, int var1, int var2, H5L_iterate_cb var3, H5L_iterate_t var4) throws HDF5LibraryException; public static synchronized native int H5Lvisit_by_name(int var0, String var1, int var2, int var3, H5L_iterate_cb var4, H5L_iterate_t var5, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Lis_registered(int var0) throws HDF5LibraryException; public static synchronized native void H5Lunregister(int var0) throws HDF5LibraryException; public static int H5Oclose(int var0) throws HDF5LibraryException { if (var0 < 0) { return 0; } else { log.trace("OPEN_IDS: H5Oclose remove {}", var0); OPEN_IDS.remove(var0); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); return _H5Oclose(var0); } } private static synchronized native int _H5Oclose(int var0) throws HDF5LibraryException; public static synchronized native void H5Ocopy(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException; public static synchronized native String H5Oget_comment(int var0) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static synchronized native void H5Oset_comment(int var0, String var1) throws HDF5LibraryException; public static synchronized native String H5Oget_comment_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native void H5Oset_comment_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException; public static synchronized native H5O_info_t H5Oget_info(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native H5O_info_t H5Oget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native H5O_info_t H5Oget_info_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Olink(int var0, int var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException; public static int H5Oopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException { int var3 = _H5Oopen(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Oopen add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Oopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Ovisit(int var0, int var1, int var2, H5O_iterate_cb var3, H5O_iterate_t var4) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Ovisit_by_name(int var0, String var1, int var2, int var3, H5O_iterate_cb var4, H5O_iterate_t var5, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Oexists_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Odecr_refcount(int var0) throws HDF5LibraryException; public static synchronized native void H5Oincr_refcount(int var0) throws HDF5LibraryException; public static int H5Oopen_by_addr(int var0, long var1) throws HDF5LibraryException { int var3 = _H5Oopen_by_addr(var0, var1); if (var3 > 0) { log.trace("OPEN_IDS: H5Oopen_by_addr add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Oopen_by_addr(int var0, long var1) throws HDF5LibraryException, NullPointerException; public static int H5Oopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException { int var7 = _H5Oopen_by_idx(var0, var1, var2, var3, var4, var6); if (var7 > 0) { log.trace("OPEN_IDS: H5Oopen_by_idx add {}", var7); OPEN_IDS.add(var7); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var7; } public static synchronized native int _H5Oopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException; public static synchronized native String H5Pget_class_name(int var0) throws HDF5LibraryException; public static int H5Pcreate(int var0) throws HDF5LibraryException { int var1 = _H5Pcreate(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Pcreate add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Pcreate(int var0) throws HDF5LibraryException; public static synchronized native int H5Pget(int var0, String var1) throws HDF5LibraryException; public static synchronized native int H5Pset(int var0, String var1, int var2) throws HDF5LibraryException; public static synchronized native int H5Pexist(int var0, String var1) throws HDF5LibraryException; public static synchronized native long H5Pget_size(int var0, String var1) throws HDF5LibraryException; public static synchronized native long H5Pget_nprops(int var0) throws HDF5LibraryException; public static synchronized native int H5Pget_class(int var0) throws HDF5LibraryException; public static synchronized native int H5Pget_class_parent(int var0) throws HDF5LibraryException; public static synchronized native int H5Pequal(int var0, int var1) throws HDF5LibraryException; public static boolean H5P_equal(int var0, int var1) throws HDF5LibraryException { return H5Pequal(var0, var1) == 1; } public static synchronized native int H5Pisa_class(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Pcopy_prop(int var0, int var1, String var2) throws HDF5LibraryException; public static synchronized native int H5Premove(int var0, String var1) throws HDF5LibraryException; public static synchronized native int H5Punregister(int var0, String var1) throws HDF5LibraryException; public static int H5Pclose_class(int var0) throws HDF5LibraryException { if (var0 < 0) { return 0; } else { log.trace("OPEN_IDS: H5Pclose_class remove {}", var0); OPEN_IDS.remove(var0); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); return _H5Pclose_class(var0); } } public static synchronized native int _H5Pclose_class(int var0) throws HDF5LibraryException; public static int H5Pclose(int var0) throws HDF5LibraryException { if (var0 < 0) { return 0; } else { log.trace("OPEN_IDS: H5Pclose remove {}", var0); OPEN_IDS.remove(var0); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); return _H5Pclose(var0); } } private static synchronized native int _H5Pclose(int var0) throws HDF5LibraryException; public static int H5Pcopy(int var0) throws HDF5LibraryException { int var1 = _H5Pcopy(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Pcopy add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Pcopy(int var0) throws HDF5LibraryException; public static int H5Pcreate_class_nocb(int var0, String var1) throws HDF5LibraryException { int var2 = _H5Pcreate_class_nocb(var0, var1); if (var2 > 0) { log.trace("OPEN_IDS: H5Pcreate_class_nocb add {}", var2); OPEN_IDS.add(var2); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var2; } private static synchronized native int _H5Pcreate_class_nocb(int var0, String var1) throws HDF5LibraryException; public static synchronized native void H5Pregister2_nocb(int var0, String var1, long var2, byte[] var4) throws HDF5LibraryException; public static synchronized native void H5Pinsert2_nocb(int var0, String var1, long var2, byte[] var4) throws HDF5LibraryException; public static synchronized native int H5Piterate(int var0, int[] var1, H5P_iterate_cb var2, H5P_iterate_t var3) throws HDF5LibraryException; public static synchronized native int H5Pget_attr_phase_change(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Pset_attr_phase_change(int var0, int var1, int var2) throws HDF5LibraryException; public static synchronized native int H5Pget_attr_creation_order(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_attr_creation_order(int var0, int var1) throws HDF5LibraryException; public static synchronized native boolean H5Pget_obj_track_times(int var0) throws HDF5LibraryException; public static synchronized native void H5Pset_obj_track_times(int var0, boolean var1) throws HDF5LibraryException; public static synchronized native int H5Pmodify_filter(int var0, int var1, int var2, long var3, int[] var5) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_filter(int var0, int var1, int var2, long var3, int[] var5) throws HDF5LibraryException; public static synchronized native int H5Pget_nfilters(int var0) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static synchronized native int H5Pget_filter(int var0, int var1, int[] var2, int[] var3, int[] var4, int var5, String[] var6) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException; public static int H5Pget_filter(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException { return H5Pget_filter2(var0, var1, var2, var3, var4, var5, var7, var8); } private static synchronized native int H5Pget_filter2(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native int H5Pget_filter_by_id(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7) throws HDF5LibraryException, NullPointerException; public static int H5Pget_filter_by_id(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException { return H5Pget_filter_by_id2(var0, var1, var2, var3, var4, var5, var7, var8); } public static synchronized native int H5Pget_filter_by_id2(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Pall_filters_avail(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Premove_filter(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Pset_deflate(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Pset_fletcher32(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pget_userblock(int var0, long[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_userblock(int var0, long var1) throws HDF5LibraryException; public static synchronized native int H5Pget_sizes(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native int H5Pset_sizes(int var0, int var1, int var2) throws HDF5LibraryException; public static synchronized native int H5Pget_sym_k(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native int H5Pset_sym_k(int var0, int var1, int var2) throws HDF5LibraryException; public static synchronized native int H5Pget_istore_k(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_istore_k(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Pget_shared_mesg_nindexes(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_shared_mesg_nindexes(int var0, int var1) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pget_shared_mesg_index(int var0, int var1, int[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native int H5Pset_shared_mesg_index(int var0, int var1, int var2, int var3) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pget_shared_mesg_phase_change(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_shared_mesg_phase_change(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pget_alignment(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native int H5Pset_alignment(int var0, long var1, long var3) throws HDF5LibraryException; public static synchronized native int H5Pget_driver(int var0) throws HDF5LibraryException; public static synchronized native long H5Pget_family_offset(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_family_offset(int var0, long var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pget_cache(int var0, int[] var1, long[] var2, long[] var3, double[] var4) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static int H5Pget_cache(int var0, int[] var1, int[] var2, int[] var3, double[] var4) throws HDF5LibraryException, NullPointerException { long[] var5 = new long[]{(long)var2[0]}; long[] var6 = new long[]{(long)var3[0]}; int var7 = H5Pget_cache(var0, var1, var5, var6, var4); var2[0] = (int)var5[0]; var3[0] = (int)var6[0]; return var7; } public static synchronized native int H5Pset_cache(int var0, int var1, long var2, long var4, double var6) throws HDF5LibraryException; public static synchronized native H5AC_cache_config_t H5Pget_mdc_config(int var0) throws HDF5LibraryException; public static synchronized native void H5Pset_mdc_config(int var0, H5AC_cache_config_t var1) throws HDF5LibraryException; public static synchronized native int H5Pget_gc_references(int var0, boolean[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Pget_gcreferences(int var0) throws HDF5LibraryException; public static synchronized int H5Pget_gc_reference(int var0, boolean[] var1) throws HDF5LibraryException, NullPointerException { return H5Pget_gc_references(var0, var1); } public static synchronized native int H5Pset_gc_references(int var0, boolean var1) throws HDF5LibraryException; public static synchronized native int H5Pget_fclose_degree(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_fclose_degree(int var0, int var1) throws HDF5LibraryException, NullPointerException; public static synchronized native long H5Pget_meta_block_size(int var0) throws HDF5LibraryException; public static synchronized native void H5Pset_meta_block_size(int var0, long var1) throws HDF5LibraryException; public static synchronized native long H5Pget_sieve_buf_size(int var0) throws HDF5LibraryException; public static synchronized native void H5Pset_sieve_buf_size(int var0, long var1) throws HDF5LibraryException; public static synchronized native int H5Pget_small_data_block_size(int var0, long[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native long H5Pget_small_data_block_size_long(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_small_data_block_size(int var0, long var1) throws HDF5LibraryException; public static synchronized native int H5Pget_libver_bounds(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_libver_bounds(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pget_elink_file_cache_size(int var0) throws HDF5LibraryException; public static synchronized native void H5Pset_elink_file_cache_size(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Pget_layout(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_layout(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Pget_chunk(int var0, int var1, long[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native int H5Pset_chunk(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized int H5Pset_chunk(int var0, int var1, long[] var2) throws HDF5Exception, NullPointerException, IllegalArgumentException { if (var2 == null) { return -1; } else { HDFArray var3 = new HDFArray(var2); byte[] var4 = var3.byteify(); int var5 = H5Pset_chunk(var0, var1, var4); Object var6 = null; var3 = null; return var5; } } public static synchronized native int H5Pget_external(int var0, int var1, long var2, String[] var4, long[] var5) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native int H5Pset_external(int var0, String var1, long var2, long var4) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pget_external_count(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_szip(int var0, int var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_shuffle(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_nbit(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_scaleoffset(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pget_fill_value(int var0, int var1, byte[] var2) throws HDF5Exception; public static synchronized int H5Pget_fill_value(int var0, int var1, Object var2) throws HDF5Exception { HDFArray var3 = new HDFArray(var2); byte[] var4 = var3.emptyBytes(); int var5 = H5Pget_fill_value(var0, var1, var4); if (var5 >= 0) { var3.arrayify(var4); } return var5; } public static synchronized native int H5Pset_fill_value(int var0, int var1, byte[] var2) throws HDF5Exception; public static synchronized int H5Pset_fill_value(int var0, int var1, Object var2) throws HDF5Exception { HDFArray var3 = new HDFArray(var2); byte[] var4 = var3.byteify(); int var5 = H5Pset_fill_value(var0, var1, var4); Object var6 = null; var3 = null; return var5; } public static synchronized native int H5Pfill_value_defined(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pget_alloc_time(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_alloc_time(int var0, int var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pget_fill_time(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_fill_time(int var0, int var1) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Pget_chunk_cache(int var0, long[] var1, long[] var2, double[] var3) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Pset_chunk_cache(int var0, long var1, long var3, double var5) throws HDF5LibraryException; public static synchronized native long H5Pget_data_transform(int var0, String[] var1, long var2) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pset_data_transform(int var0, String var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pget_buffer(int var0, byte[] var1, byte[] var2) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native long H5Pget_buffer_size(int var0) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native void H5Pset_buffer_size(int var0, long var1) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pget_edc_check(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_edc_check(int var0, int var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pget_btree_ratios(int var0, double[] var1, double[] var2, double[] var3) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_btree_ratios(int var0, double var1, double var3, double var5) throws HDF5LibraryException; public static synchronized native int H5Pget_hyper_vector_size(int var0, long[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_hyper_vector_size(int var0, long var1) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Pget_create_intermediate_group(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_create_intermediate_group(int var0, boolean var1) throws HDF5LibraryException; public static synchronized native long H5Pget_local_heap_size_hint(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_local_heap_size_hint(int var0, long var1) throws HDF5LibraryException; public static synchronized native int H5Pget_link_phase_change(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_link_phase_change(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pget_est_link_info(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_est_link_info(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pget_link_creation_order(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_link_creation_order(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Pget_char_encoding(int var0) throws HDF5LibraryException; public static synchronized native void H5Pset_char_encoding(int var0, int var1) throws HDF5LibraryException; public static synchronized native long H5Pget_nlinks(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_nlinks(int var0, long var1) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native long H5Pget_elink_prefix(int var0, String[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_elink_prefix(int var0, String var1) throws HDF5LibraryException, NullPointerException; public static int H5Pget_elink_fapl(int var0) throws HDF5LibraryException { int var1 = _H5Pget_elink_fapl(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Pget_elink_fapl add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Pget_elink_fapl(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_elink_fapl(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Pget_elink_acc_flags(int var0) throws HDF5LibraryException; public static synchronized native int H5Pset_elink_acc_flags(int var0, int var1) throws HDF5LibraryException, IllegalArgumentException; public static synchronized native int H5Pget_copy_object(int var0) throws HDF5LibraryException; public static synchronized native void H5Pset_copy_object(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Pget_version(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native void H5Pget_fapl_core(int var0, long[] var1, boolean[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_fapl_core(int var0, long var1, boolean var3) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pget_fapl_direct(int var0, long[] var1) throws HDF5LibraryException; public static synchronized native int H5Pset_fapl_direct(int var0, long var1, long var3, long var5) throws HDF5LibraryException; public static synchronized native int H5Pget_fapl_family(int var0, long[] var1, int[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_fapl_family(int var0, long var1, int var3) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Pget_fapl_multi(int var0, int[] var1, int[] var2, String[] var3, long[] var4) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Pset_fapl_multi(int var0, int[] var1, int[] var2, String[] var3, long[] var4, boolean var5) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static synchronized native int H5Pget_preserve(int var0) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static synchronized native int H5Pset_preserve(int var0, boolean var1) throws HDF5LibraryException, IllegalArgumentException; /** @deprecated */ @Deprecated public static int H5Pset_fapl_log(int var0, String var1, int var2, int var3) throws HDF5LibraryException, NullPointerException { H5Pset_fapl_log(var0, var1, (long)var2, (long)var3); return 1; } public static synchronized native void H5Pset_fapl_log(int var0, String var1, long var2, long var4) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_fapl_sec2(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Pset_fapl_split(int var0, String var1, int var2, String var3, int var4) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_fapl_stdio(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Pset_fapl_windows(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5PLset_loading_state(int var0) throws HDF5LibraryException; public static synchronized native int H5PLget_loading_state() throws HDF5LibraryException; private static synchronized native int H5Rcreate(byte[] var0, int var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized byte[] H5Rcreate(int var0, String var1, int var2, int var3) throws HDF5LibraryException, NullPointerException, IllegalArgumentException { byte var4 = 8; if (var2 == HDF5Constants.H5R_DATASET_REGION) { var4 = 12; } byte[] var5 = new byte[var4]; H5Rcreate(var5, var0, var1, var2, var3); return var5; } public static int H5Rdereference(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException { int var3 = _H5Rdereference(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Rdereference add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Rdereference(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native long H5Rget_name(int var0, int var1, byte[] var2, String[] var3, long var4) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; /** @deprecated */ @Deprecated public static synchronized native int H5Rget_obj_type(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static int H5Rget_obj_type(int var0, int var1, byte[] var2, int[] var3) throws HDF5LibraryException, NullPointerException, IllegalArgumentException { return H5Rget_obj_type2(var0, var1, var2, var3); } private static synchronized native int H5Rget_obj_type2(int var0, int var1, byte[] var2, int[] var3) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static int H5Rget_region(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException { int var3 = _H5Rget_region(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Rget_region add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Rget_region(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static int H5Sclose(int var0) throws HDF5LibraryException { if (var0 < 0) { return 0; } else { log.trace("OPEN_IDS: H5Sclose remove {}", var0); OPEN_IDS.remove(var0); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); return _H5Sclose(var0); } } private static synchronized native int _H5Sclose(int var0) throws HDF5LibraryException; public static int H5Scopy(int var0) throws HDF5LibraryException { int var1 = _H5Scopy(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Scopy add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Scopy(int var0) throws HDF5LibraryException; public static int H5Screate(int var0) throws HDF5LibraryException { int var1 = _H5Screate(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Screate add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Screate(int var0) throws HDF5LibraryException; public static int H5Screate_simple(int var0, long[] var1, long[] var2) throws HDF5Exception, NullPointerException { int var3 = _H5Screate_simple(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Screate_simple add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Screate_simple(int var0, long[] var1, long[] var2) throws HDF5Exception, NullPointerException; /** @deprecated */ @Deprecated public static int H5Screate_simple(int var0, byte[] var1, byte[] var2) throws HDF5Exception, NullPointerException { ByteBuffer var3 = ByteBuffer.wrap(var1); long[] var4 = var3.asLongBuffer().array(); ByteBuffer var5 = ByteBuffer.wrap(var2); long[] var6 = var5.asLongBuffer().array(); int var7 = _H5Screate_simple(var0, var4, var6); if (var7 > 0) { log.trace("OPEN_IDS: H5S add {}", var7); OPEN_IDS.add(var7); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var7; } public static synchronized native int H5Sdecode(byte[] var0) throws HDF5LibraryException, NullPointerException; public static synchronized native byte[] H5Sencode(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Sextent_copy(int var0, int var1) throws HDF5LibraryException; public static synchronized native boolean H5Sextent_equal(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Sget_select_bounds(int var0, long[] var1, long[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized native long H5Sget_select_elem_npoints(int var0) throws HDF5LibraryException; public static synchronized native int H5Sget_select_elem_pointlist(int var0, long var1, long var3, long[] var5) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Sget_select_hyper_blocklist(int var0, long var1, long var3, long[] var5) throws HDF5LibraryException, NullPointerException; public static synchronized native long H5Sget_select_hyper_nblocks(int var0) throws HDF5LibraryException; public static synchronized native long H5Sget_select_npoints(int var0) throws HDF5LibraryException; public static synchronized native int H5Sget_select_type(int var0) throws HDF5LibraryException; public static synchronized native int H5Sget_simple_extent_dims(int var0, long[] var1, long[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Sget_simple_extent_ndims(int var0) throws HDF5LibraryException; public static synchronized native long H5Sget_simple_extent_npoints(int var0) throws HDF5LibraryException; public static synchronized native int H5Sget_simple_extent_type(int var0) throws HDF5LibraryException; public static synchronized native boolean H5Sis_simple(int var0) throws HDF5LibraryException; public static synchronized native int H5Soffset_simple(int var0, byte[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Soffset_simple(int var0, long[] var1) throws HDF5Exception, NullPointerException { if (var1 == null) { return -1; } else { HDFArray var2 = new HDFArray(var1); byte[] var3 = var2.byteify(); int var4 = H5Soffset_simple(var0, var3); Object var5 = null; var2 = null; return var4; } } public static synchronized native int H5Sselect_all(int var0) throws HDF5LibraryException; private static synchronized native int H5Sselect_elements(int var0, int var1, int var2, byte[] var3) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Sselect_elements(int var0, int var1, int var2, long[][] var3) throws HDF5Exception, HDF5LibraryException, NullPointerException { if (var3 == null) { return -1; } else { HDFArray var4 = new HDFArray(var3); byte[] var5 = var4.byteify(); int var6 = H5Sselect_elements(var0, var1, var2, var5); Object var7 = null; var4 = null; return var6; } } public static synchronized int H5Sselect_hyperslab(int var0, int var1, byte[] var2, byte[] var3, byte[] var4, byte[] var5) throws HDF5LibraryException, NullPointerException, IllegalArgumentException { ByteBuffer var6 = ByteBuffer.wrap(var2); long[] var7 = var6.asLongBuffer().array(); ByteBuffer var8 = ByteBuffer.wrap(var3); long[] var9 = var8.asLongBuffer().array(); ByteBuffer var10 = ByteBuffer.wrap(var4); long[] var11 = var10.asLongBuffer().array(); ByteBuffer var12 = ByteBuffer.wrap(var5); long[] var13 = var12.asLongBuffer().array(); return H5Sselect_hyperslab(var0, var1, var7, var9, var11, var13); } public static synchronized native int H5Sselect_hyperslab(int var0, int var1, long[] var2, long[] var3, long[] var4, long[] var5) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native int H5Sselect_none(int var0) throws HDF5LibraryException; public static synchronized native boolean H5Sselect_valid(int var0) throws HDF5LibraryException; public static synchronized native int H5Sset_extent_none(int var0) throws HDF5LibraryException; public static synchronized native int H5Sset_extent_simple(int var0, int var1, long[] var2, long[] var3) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Sset_extent_simple(int var0, int var1, byte[] var2, byte[] var3) throws HDF5LibraryException, NullPointerException { ByteBuffer var4 = ByteBuffer.wrap(var2); long[] var5 = var4.asLongBuffer().array(); ByteBuffer var6 = ByteBuffer.wrap(var3); long[] var7 = var6.asLongBuffer().array(); return H5Sset_extent_simple(var0, var1, var5, var7); } /** @deprecated */ @Deprecated public static int H5Tarray_create(int var0, int var1, int[] var2, int[] var3) throws HDF5LibraryException, NullPointerException { int var4 = _H5Tarray_create(var0, var1, var2, var3); if (var4 > 0) { log.trace("OPEN_IDS: H5T add {}", var4); OPEN_IDS.add(var4); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var4; } private static synchronized native int _H5Tarray_create(int var0, int var1, int[] var2, int[] var3) throws HDF5LibraryException, NullPointerException; public static int H5Tarray_create(int var0, int var1, long[] var2) throws HDF5LibraryException, NullPointerException { int var3 = _H5Tarray_create2(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Tarray_create add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Tarray_create2(int var0, int var1, long[] var2) throws HDF5LibraryException, NullPointerException; public static int H5Tclose(int var0) throws HDF5LibraryException { if (var0 < 0) { return 0; } else { log.trace("OPEN_IDS: H5Tclose remove {}", var0); OPEN_IDS.remove(var0); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); return _H5Tclose(var0); } } private static synchronized native int _H5Tclose(int var0) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static int H5Tcommit(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException { return H5Tcommit1(var0, var1, var2); } /** @deprecated */ @Deprecated public static synchronized native int H5Tcommit1(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Tcommit(int var0, String var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Tcommit_anon(int var0, int var1, int var2, int var3) throws HDF5LibraryException; public static synchronized native boolean H5Tcommitted(int var0) throws HDF5LibraryException; public static synchronized native void H5Tcompiler_conv(int var0, int var1) throws HDF5LibraryException; public static synchronized native void H5Tconvert(int var0, int var1, long var2, byte[] var4, byte[] var5, int var6) throws HDF5LibraryException, NullPointerException; public static int H5Tcopy(int var0) throws HDF5LibraryException { int var1 = _H5Tcopy(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Tcopy add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Tcopy(int var0) throws HDF5LibraryException; public static int H5Tcreate(int var0, int var1) throws HDF5LibraryException { return H5Tcreate(var0, (long)var1); } public static int H5Tcreate(int var0, long var1) throws HDF5LibraryException { int var3 = _H5Tcreate(var0, var1); if (var3 > 0) { log.trace("OPEN_IDS: H5Tcreate add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Tcreate(int var0, long var1) throws HDF5LibraryException; public static int H5Tdecode(byte[] var0) throws HDF5LibraryException, NullPointerException { int var1 = _H5Tdecode(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Tdecode add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Tdecode(byte[] var0) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Tdetect_class(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Tencode(int var0, byte[] var1, long var2) throws HDF5LibraryException, NullPointerException; public static int H5Tenum_create(int var0) throws HDF5LibraryException { int var1 = _H5Tenum_create(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Tenum_create add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Tenum_create(int var0) throws HDF5LibraryException; public static synchronized native void H5Tenum_insert(int var0, String var1, byte[] var2) throws HDF5LibraryException, NullPointerException; public static int H5Tenum_insert(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException { return H5Tenum_insert_int(var0, var1, var2); } public static int H5Tenum_insert(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException { int[] var3 = new int[]{var2}; return H5Tenum_insert_int(var0, var1, var3); } private static synchronized native int H5Tenum_insert_int(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized native String H5Tenum_nameof(int var0, byte[] var1, long var2) throws HDF5LibraryException, NullPointerException; public static int H5Tenum_nameof(int var0, int[] var1, String[] var2, int var3) throws HDF5LibraryException, NullPointerException { return H5Tenum_nameof_int(var0, var1, var2, var3); } private static synchronized native int H5Tenum_nameof_int(int var0, int[] var1, String[] var2, int var3) throws HDF5LibraryException, NullPointerException; public static synchronized native void H5Tenum_valueof(int var0, String var1, byte[] var2) throws HDF5LibraryException, NullPointerException; public static int H5Tenum_valueof(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException { return H5Tenum_valueof_int(var0, var1, var2); } private static synchronized native int H5Tenum_valueof_int(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Tequal(int var0, int var1) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static synchronized native int H5Tget_array_dims(int var0, int[] var1, int[] var2) throws HDF5LibraryException, NullPointerException; /** @deprecated */ @Deprecated public static int H5Tget_array_dims(int var0, long[] var1, int[] var2) throws HDF5LibraryException, NullPointerException { return H5Tget_array_dims1(var0, var1, var2); } /** @deprecated */ @Deprecated private static synchronized native int H5Tget_array_dims1(int var0, long[] var1, int[] var2) throws HDF5LibraryException, NullPointerException; public static int H5Tget_array_dims(int var0, long[] var1) throws HDF5LibraryException, NullPointerException { return H5Tget_array_dims2(var0, var1); } public static synchronized native int H5Tget_array_dims2(int var0, long[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Tget_array_ndims(int var0) throws HDF5LibraryException; public static synchronized native int H5Tget_class(int var0) throws HDF5LibraryException; public static String H5Tget_class_name(int var0) { String var1 = null; if (HDF5Constants.H5T_INTEGER == var0) { var1 = "H5T_INTEGER"; } else if (HDF5Constants.H5T_FLOAT == var0) { var1 = "H5T_FLOAT"; } else if (HDF5Constants.H5T_TIME == var0) { var1 = "H5T_TIME"; } else if (HDF5Constants.H5T_STRING == var0) { var1 = "H5T_STRING"; } else if (HDF5Constants.H5T_BITFIELD == var0) { var1 = "H5T_BITFIELD"; } else if (HDF5Constants.H5T_OPAQUE == var0) { var1 = "H5T_OPAQUE"; } else if (HDF5Constants.H5T_COMPOUND == var0) { var1 = "H5T_COMPOUND"; } else if (HDF5Constants.H5T_REFERENCE == var0) { var1 = "H5T_REFERENCE"; } else if (HDF5Constants.H5T_ENUM == var0) { var1 = "H5T_ENUM"; } else if (HDF5Constants.H5T_VLEN == var0) { var1 = "H5T_VLEN"; } else if (HDF5Constants.H5T_ARRAY == var0) { var1 = "H5T_ARRAY"; } else { var1 = "H5T_NO_CLASS"; } return var1; } public static int H5Tget_create_plist(int var0) throws HDF5LibraryException { int var1 = _H5Tget_create_plist(var0); if (var1 > 0) { log.trace("OPEN_IDS: _H5Tget_create_plist add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Tget_create_plist(int var0) throws HDF5LibraryException; public static synchronized native int H5Tget_cset(int var0) throws HDF5LibraryException; public static synchronized native int H5Tset_cset(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Tget_ebias(int var0) throws HDF5LibraryException; public static int H5Tset_ebias(int var0, int var1) throws HDF5LibraryException { H5Tset_ebias(var0, (long)var1); return 0; } public static synchronized native long H5Tget_ebias_long(int var0) throws HDF5LibraryException; public static synchronized native void H5Tset_ebias(int var0, long var1) throws HDF5LibraryException; public static synchronized native void H5Tget_fields(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static int H5Tget_fields(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException { return H5Tget_fields_int(var0, var1); } private static synchronized native int H5Tget_fields_int(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; public static synchronized native void H5Tset_fields(int var0, long var1, long var3, long var5, long var7, long var9) throws HDF5LibraryException; public static int H5Tset_fields(int var0, int var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException { H5Tset_fields(var0, (long)var1, (long)var2, (long)var3, (long)var4, (long)var5); return 0; } public static synchronized native int H5Tget_inpad(int var0) throws HDF5LibraryException; public static synchronized native int H5Tset_inpad(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Tget_member_class(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Tget_member_index(int var0, String var1); public static synchronized native String H5Tget_member_name(int var0, int var1); public static synchronized native long H5Tget_member_offset(int var0, int var1) throws HDF5LibraryException; public static int H5Tget_member_type(int var0, int var1) throws HDF5LibraryException { int var2 = _H5Tget_member_type(var0, var1); if (var2 > 0) { log.trace("OPEN_IDS: H5Tget_member_type add {}", var2); OPEN_IDS.add(var2); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var2; } private static synchronized native int _H5Tget_member_type(int var0, int var1) throws HDF5LibraryException; public static synchronized native void H5Tget_member_value(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException; public static int H5Tget_member_value(int var0, int var1, int[] var2) throws HDF5LibraryException, NullPointerException { return H5Tget_member_value_int(var0, var1, var2); } private static synchronized native int H5Tget_member_value_int(int var0, int var1, int[] var2) throws HDF5LibraryException, NullPointerException; public static synchronized int H5Tget_native_type(int var0) throws HDF5LibraryException { return H5Tget_native_type(var0, HDF5Constants.H5T_DIR_ASCEND); } public static int H5Tget_native_type(int var0, int var1) throws HDF5LibraryException { int var2 = _H5Tget_native_type(var0, var1); if (var2 > 0) { log.trace("OPEN_IDS: H5Tget_native_type add {}", var2); OPEN_IDS.add(var2); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var2; } private static synchronized native int _H5Tget_native_type(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Tget_nmembers(int var0) throws HDF5LibraryException; public static synchronized native int H5Tget_norm(int var0) throws HDF5LibraryException; public static synchronized native int H5Tset_norm(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Tget_offset(int var0) throws HDF5LibraryException; public static int H5Tset_offset(int var0, int var1) throws HDF5LibraryException { H5Tset_offset(var0, (long)var1); return 0; } public static synchronized native void H5Tset_offset(int var0, long var1) throws HDF5LibraryException; public static synchronized native int H5Tget_order(int var0) throws HDF5LibraryException; public static synchronized native int H5Tset_order(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Tget_pad(int var0, int[] var1) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Tset_pad(int var0, int var1, int var2) throws HDF5LibraryException; public static synchronized native int H5Tget_precision(int var0) throws HDF5LibraryException; public static int H5Tset_precision(int var0, int var1) throws HDF5LibraryException { H5Tset_precision(var0, (long)var1); return 0; } public static synchronized native long H5Tget_precision_long(int var0) throws HDF5LibraryException; public static synchronized native void H5Tset_precision(int var0, long var1) throws HDF5LibraryException; public static synchronized native int H5Tget_sign(int var0) throws HDF5LibraryException; public static synchronized native int H5Tset_sign(int var0, int var1) throws HDF5LibraryException; public static synchronized native int H5Tget_size(int var0) throws HDF5LibraryException; public static int H5Tset_size(int var0, int var1) throws HDF5LibraryException { H5Tset_size(var0, (long)var1); return 0; } public static synchronized native long H5Tget_size_long(int var0) throws HDF5LibraryException; public static synchronized native void H5Tset_size(int var0, long var1) throws HDF5LibraryException; public static synchronized native int H5Tget_strpad(int var0) throws HDF5LibraryException; public static synchronized native int H5Tset_strpad(int var0, int var1) throws HDF5LibraryException; public static int H5Tget_super(int var0) throws HDF5LibraryException { int var1 = _H5Tget_super(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Tget_super add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Tget_super(int var0) throws HDF5LibraryException; public static synchronized native String H5Tget_tag(int var0) throws HDF5LibraryException; public static synchronized native int H5Tset_tag(int var0, String var1) throws HDF5LibraryException; public static synchronized native int H5Tinsert(int var0, String var1, long var2, int var4) throws HDF5LibraryException, NullPointerException; public static synchronized native boolean H5Tis_variable_str(int var0) throws HDF5LibraryException; public static synchronized native int H5Tlock(int var0) throws HDF5LibraryException; /** @deprecated */ @Deprecated public static int H5Topen(int var0, String var1) throws HDF5LibraryException, NullPointerException { int var2 = _H5Topen(var0, var1); if (var2 > 0) { log.trace("OPEN_IDS: H5Topen add {}", var2); OPEN_IDS.add(var2); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var2; } private static synchronized native int _H5Topen(int var0, String var1) throws HDF5LibraryException, NullPointerException; public static int H5Topen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException { int var3 = _H5Topen2(var0, var1, var2); if (var3 > 0) { log.trace("OPEN_IDS: H5Topen add {}", var3); OPEN_IDS.add(var3); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var3; } private static synchronized native int _H5Topen2(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Tpack(int var0) throws HDF5LibraryException; public static int H5Tvlen_create(int var0) throws HDF5LibraryException { int var1 = _H5Tvlen_create(var0); if (var1 > 0) { log.trace("OPEN_IDS: H5Tvlen_create add {}", var1); OPEN_IDS.add(var1); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } return var1; } private static synchronized native int _H5Tvlen_create(int var0) throws HDF5LibraryException; public static synchronized native int H5Zfilter_avail(int var0) throws HDF5LibraryException, NullPointerException; public static synchronized native int H5Zget_filter_info(int var0) throws HDF5LibraryException; public static synchronized native int H5Zunregister(int var0) throws HDF5LibraryException, NullPointerException; static { loadH5Lib(); } }