From 9d4865279fb04028963d49105c0d12918929485b Mon Sep 17 00:00:00 2001
From: 张洋洋 <10611411+yang-yang-z@user.noreply.gitee.com>
Date: 星期一, 23 十二月 2024 17:39:20 +0800
Subject: [PATCH] [add]h5读取改造
---
src/main/java/com/se/simu/helper/H5ReadHelper.java | 393 ++++++++
src/main/java/com/se/simu/service/IBizH5FileParserService.java | 2
src/main/java/hdf/hdf5lib/H5.java | 2399 +++++++++++++++++++++++++++++++++++++++++++++++++++
src/main/java/com/se/simu/service/Impl/BizH5FileParserServiceImpl.java | 23
src/main/java/com/se/simu/controller/BizH5FileParserController.java | 2
5 files changed, 2,814 insertions(+), 5 deletions(-)
diff --git a/src/main/java/com/se/simu/controller/BizH5FileParserController.java b/src/main/java/com/se/simu/controller/BizH5FileParserController.java
index b1d8bba..b8719c9 100644
--- a/src/main/java/com/se/simu/controller/BizH5FileParserController.java
+++ b/src/main/java/com/se/simu/controller/BizH5FileParserController.java
@@ -53,7 +53,7 @@
*/
@ApiOperation("鎵撳紑HDF5鏂囦欢")
@PostMapping("/open-hdf5-file")
- public R<Object> openHdf5File(String filePath) throws HDF5LibraryException {
+ public R<Object> openHdf5File(String filePath) {
return success(bizH5FileParserService.openH5File(filePath));
}
diff --git a/src/main/java/com/se/simu/helper/H5ReadHelper.java b/src/main/java/com/se/simu/helper/H5ReadHelper.java
new file mode 100644
index 0000000..12aac7c
--- /dev/null
+++ b/src/main/java/com/se/simu/helper/H5ReadHelper.java
@@ -0,0 +1,393 @@
+package com.se.simu.helper;
+
+import java.io.File;
+import java.io.FileNotFoundException;
+import java.io.IOException;
+import java.io.PrintWriter;
+import java.io.UnsupportedEncodingException;
+import java.nio.ByteBuffer;
+import java.nio.ByteOrder;
+import java.nio.charset.Charset;
+import java.text.DecimalFormat;
+import java.util.EnumSet;
+import java.util.HashMap;
+import java.util.Map;
+
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+
+public class H5ReadHelper {
+ //浼犲叆璺熺粍
+ private static String PATH = "/";
+ //鏁版嵁闆嗗悕绉�
+ private static String DATASETNAME;
+ //璁剧疆鏁版嵁闆嗚鏁� 涔嬪悗浼氬姩鎬佽幏寰楄鏁帮紝瀹炵幇瀵瑰簲缂╁锛堝缓璁垵濮嬪�艰缃ぇ浜涳級
+ private static final long DIM0 = 100000;
+ //璁剧疆鏁村瀷闀垮害
+ protected static final int INTEGERSIZE = 4;
+ //璁剧疆闀挎暣鍨嬮暱搴�
+ protected static final int LONGSIZE = 8;
+ //璁剧疆鍗曠簿搴﹂暱搴�
+ protected static final int FLOATSIZE = 4;
+ //璁剧疆鍙岀簿搴﹀瀷闀垮害
+ protected static final int DOUBLESIZE = 8;
+ //璁剧疆瀛楃涓叉渶澶ч暱搴�
+ protected final static int MAXSTRINGSIZE = 80;
+
+ static class Sensor_Datatype {
+ static int numberMembers = 5;//琛ㄧず鍒楅」鏁�
+ static int[] memberDims = {1, 1, 1, 1, 1};
+ static String[] memberNames = { //瀹氫箟琛ㄤ腑鎵�鏈夊瓧娈靛悕绉�
+ "trading_day", "updatetime", "instrument_id", "gap_number", "reserve"
+ };//鏁版嵁鍏冪礌涓哄叿浣撶殑琛ㄥ瓧娈靛悕绉�
+ static long[] memberMemTypes = { //瀵瑰簲瀛楁绫诲瀷鍊�
+ HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5T_NATIVE_LONG, HDF5Constants.H5T_NATIVE_FLOAT, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5T_C_S1
+ };//鐢ㄤ簬瀹氫箟姣忎釜瀛楁鍏冪礌鐨勭被鍨� 鎸囧畾瀛楁鍏冪礌绫诲瀷鐨勬椂鍊欐敞鎰忕被鍨嬮暱搴︼紝濡傛灉灏忎簬瀛樺偍鏁伴暱搴︼紝鍒欎細鍙戠敓鏁版嵁婧㈠嚭
+ static long[] memberFileTypes = { //瀵瑰簲瀛楁绫诲瀷澶у皬
+ HDF5Constants.H5T_STD_I32BE, HDF5Constants.H5T_STD_I64BE, HDF5Constants.H5T_IEEE_F32BE, HDF5Constants.H5T_IEEE_F64BE, HDF5Constants.H5T_C_S1
+ };//瀵瑰簲鐨勫瓧娈电被鍨嬬殑澶у皬
+ static int[] memberStorage = { //瀵瑰簲瀛楁绫诲瀷鍊奸暱搴�
+ INTEGERSIZE, LONGSIZE, FLOATSIZE, DOUBLESIZE, MAXSTRINGSIZE
+ };//瀹氫箟瀵瑰簲绫诲瀷鐨勯暱搴﹀ぇ灏�
+
+ // Data size is the storage size for the members.
+ static long getTotalDataSize() {
+ long data_size = 0;
+ for (int indx = 0; indx < numberMembers; indx++) {
+ data_size += memberStorage[indx] * memberDims[indx];
+ }
+ return DIM0 * data_size;
+ }
+
+ static long getDataSize() {
+ long data_size = 0;
+ for (int indx = 0; indx < numberMembers; indx++) {
+ data_size += memberStorage[indx] * memberDims[indx];
+ }
+ return data_size;
+ }
+
+ static int getOffset(int memberItem) {
+ int data_offset = 0;
+ for (int indx = 0; indx < memberItem; indx++) {
+ data_offset += memberStorage[indx];
+ }
+ return data_offset;
+ }
+ }
+
+ static class Sensor {
+ public Integer trading_day;
+ public Long updatetime;
+ public Float instrument_id;
+ public Double gap_number;
+ public String reserve;
+
+ public Sensor(Integer trading_day, Long updatetime, Float instrument_id, Double gap_number, String reserve) {
+ super();
+ this.trading_day = trading_day;
+ this.updatetime = updatetime;
+ this.instrument_id = instrument_id;
+ this.gap_number = gap_number;
+ this.reserve = reserve;
+ }
+
+ Sensor(ByteBuffer databuf, int dbposition) {
+ readBuffer(databuf, dbposition);
+ }
+
+ //閬嶅巻.h5涓嬭竟鐨勬墍鏈夋暟鎹泦锛屽苟浠ユ暟缁勭殑鏂瑰紡杩斿洖鏁版嵁闆嗗悕绉�
+ private static String[] do_iterate(String filePath) {
+ int file_id = -1;
+
+ // Open a file using default properties.
+ try {
+ file_id = H5.H5Fopen(filePath, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+
+ // Begin iteration.
+ System.out.println("Objects in root group:");
+ try {
+ if (file_id >= 0) {
+ int count = (int) H5.H5Gn_members(file_id, PATH);
+ String[] oname = new String[count];
+ int[] otype = new int[count];
+ int[] ltype = new int[count];
+ long[] orefs = new long[count];
+ H5.H5Gget_obj_info_all(file_id, PATH, oname, otype, ltype, orefs, HDF5Constants.H5_INDEX_NAME);
+ // Get type of the object and display its name and type.
+ for (int indx = 0; indx < otype.length; indx++) {
+ switch (H5O_type.get(otype[indx])) {
+ case H5O_TYPE_GROUP:
+ System.out.print(" Group: " + oname[indx] + "," + oname.length + " ");
+ break;
+ case H5O_TYPE_DATASET:
+ System.out.print(" Dataset: " + oname[indx] + "," + oname.length + " ");
+ break;
+ case H5O_TYPE_NAMED_DATATYPE:
+ System.out.print(" Datatype: " + oname[indx] + "," + oname.length + " ");
+ break;
+ default:
+ System.out.print(" Unknown: " + oname[indx] + "," + oname.length + " ");
+ }
+ }
+ System.out.println();
+ return oname;
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+
+ // Close the file.
+ try {
+ if (file_id >= 0) {
+ H5.H5Fclose(file_id);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ return new String[]{"鏁版嵁闆嗛亶鍘嗗嚭閿�"};
+ }
+
+ //璇绘暟鎹�
+ void readBuffer(ByteBuffer databuf, int dbposition) {
+ //0
+ this.trading_day = databuf.getInt(dbposition + Sensor_Datatype.getOffset(0));
+ //1
+ this.updatetime = databuf.getLong(dbposition + Sensor_Datatype.getOffset(1));
+ //2
+ this.instrument_id = databuf.getFloat(dbposition + Sensor_Datatype.getOffset(2));
+ //3
+ this.gap_number = databuf.getDouble(dbposition + Sensor_Datatype.getOffset(3));
+ //4
+ ByteBuffer stringbuf_reserve = databuf.duplicate();
+ stringbuf_reserve.position(dbposition + Sensor_Datatype.getOffset(4));
+ stringbuf_reserve.limit(dbposition + Sensor_Datatype.getOffset(4) + MAXSTRINGSIZE);
+ byte[] bytearr_reserve = new byte[stringbuf_reserve.remaining()];
+ stringbuf_reserve.get(bytearr_reserve);
+ this.reserve = new String(bytearr_reserve, Charset.forName("UTF-8")).trim();
+ }
+
+ //閲嶅啓toString()鏂规硶
+ @Override
+ public String toString() {
+ DecimalFormat df = new DecimalFormat("#0.0000");//娴偣鏁颁繚鐣�4浣嶅皬鏁帮紝涓嶈冻锛岀敤0琛ラ綈
+ return trading_day + ", " + updatetime + ", "
+ + df.format(instrument_id) + ", " + df.format(gap_number) + ", " + reserve;
+ }
+ }
+
+ //璇诲彇琛ㄧ粨鏋勬暟鎹泦
+ private static void ReadDataset(String filePath) {
+ int file_id = -1;
+ int strtype_id = -1;
+ int memtype_id = -1;
+ int dataspace_id = -1;
+ int dataset_id = -1;
+ long[] dims = {DIM0};
+ Sensor[] object_data2 = new Sensor[(int) dims[0]];
+ ;
+ byte[] dset_data;
+ String[] dsetName = {};
+ //閬嶅巻.h5鏂囦欢涓嬭竟鐨勬墍鏈夋暟鎹泦
+ dsetName = Sensor.do_iterate(filePath);
+ //閬嶅巻寰楀埌鏂囦欢涓嬭竟鐨勫悇涓暟鎹泦 Open an existing dataset.
+ for (int i = 0; i < dsetName.length; i++) {
+ try {
+ file_id = H5.H5Fopen(filePath, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ DATASETNAME = dsetName[i];
+ try {
+ if (file_id >= 0) {
+ dataset_id = H5.H5Dopen(file_id, DATASETNAME, HDF5Constants.H5P_DEFAULT);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ // Get dataspace and allocate memory for read buffer.
+ try {
+ if (dataset_id >= 0) {
+ dataspace_id = H5.H5Dget_space(dataset_id);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ try {
+ if (dataspace_id >= 0) {
+ H5.H5Sget_simple_extent_dims(dataspace_id, dims, null);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ // Create string datatype.
+ try {
+ strtype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
+ if (strtype_id >= 0) {
+ H5.H5Tset_size(strtype_id, MAXSTRINGSIZE);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ // Create the compound datatype for memory.
+ try {
+ memtype_id = H5.H5Tcreate(HDF5Constants.H5T_COMPOUND, Sensor_Datatype.getDataSize());
+ if (memtype_id >= 0) {
+ for (int indx = 0; indx < Sensor_Datatype.numberMembers; indx++) {
+ int type_id = (int) Sensor_Datatype.memberMemTypes[indx];
+ if (type_id == HDF5Constants.H5T_C_S1) {
+ type_id = strtype_id;
+ }
+ H5.H5Tinsert(memtype_id, Sensor_Datatype.memberNames[indx], Sensor_Datatype.getOffset(indx),
+ type_id);
+ }
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ // allocate memory for read buffer.
+ dset_data = new byte[(int) dims[0] * (int) Sensor_Datatype.getDataSize()];
+ // Read data.
+ try {
+ if ((dataset_id >= 0) && (memtype_id >= 0)) {
+ H5.H5Dread(dataset_id, memtype_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, dset_data);
+ }
+ ByteBuffer inBuf = ByteBuffer.wrap(dset_data);
+ inBuf.order(ByteOrder.nativeOrder());
+ for (int indx = 0; indx < (int) dims[0]; indx++) {
+ object_data2[indx] = new Sensor(inBuf, indx * (int) Sensor_Datatype.getDataSize());//灏嗚鍙栧埌鐨勬暟鎹瓨鍏ヨ鏁扮粍
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ // Output the data to the screen.
+ for (int indx = 0; indx < dims[0]; indx++) {
+ System.out.println(DATASETNAME + " [" + indx + "]:");
+ System.out.println(object_data2[indx].toString());
+ }
+ //鍐欏埌鏈湴鐨勬枃鏈腑
+ H5ReadHelper.writeLocalExcel(object_data2, DATASETNAME, dims[0]);
+ try {
+ if (dataset_id >= 0) {
+ H5.H5Dclose(dataset_id);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ // Terminate access to the data space.
+ try {
+ if (dataspace_id >= 0) {
+ H5.H5Sclose(dataspace_id);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ // Terminate access to the mem type.
+ try {
+ if (memtype_id >= 0) {
+ H5.H5Tclose(memtype_id);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ try {
+ if (strtype_id >= 0) {
+ H5.H5Tclose(strtype_id);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ // Close the file.
+ try {
+ if (file_id >= 0) {
+ H5.H5Fclose(file_id);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ }
+
+ }
+
+ enum H5O_type {
+ H5O_TYPE_UNKNOWN(-1), // Unknown object type
+ H5O_TYPE_GROUP(0), // Object is a group
+ H5O_TYPE_DATASET(1), // Object is a dataset
+ H5O_TYPE_NAMED_DATATYPE(2), // Object is a named data type
+ H5O_TYPE_NTYPES(3); // Number of different object types
+ private static final Map<Integer, H5O_type> lookup = new HashMap<Integer, H5O_type>();
+
+ static {
+ for (H5O_type s : EnumSet.allOf(H5O_type.class)) {
+ lookup.put(s.getCode(), s);
+ }
+ }
+
+ private int code;
+
+ H5O_type(int layout_type) {
+ this.code = layout_type;
+ }
+
+ public int getCode() {
+ return this.code;
+ }
+
+ public static H5O_type get(int code) {
+ return lookup.get(code);
+ }
+ }
+
+ //灏嗚鍑虹殑鏁版嵁鍐欏埌鏈湴
+ public static void writeLocalExcel(Sensor[] dataSensors, String datasetName, long dims) {
+ //娴嬭瘯鏁版嵁鍐欏嚭 io
+ String url = "D:/hdf5_write_txt/";
+ String dsetUrl = datasetName;
+ String path = url + dsetUrl + ".txt";
+ File file = new File(path);
+ if (file.exists()) {
+ file.delete();
+ } else {
+ file = new File(path);
+ try {
+ file.createNewFile();
+ } catch (IOException e) {
+ e.printStackTrace();
+ }
+ }
+ //鎵ц閬嶅巻鍐欏嚭
+ try {
+ PrintWriter pw = new PrintWriter(file, "UTF-8");
+ pw.append(
+ "trading_day, updatetime, instrument_id, gap_number, reserve "
+ );
+ pw.print("\n");
+ for (int i = 0; i < dims; i++) {
+ StringBuffer sb = new StringBuffer("");
+ //褰撳墠鑾峰彇鐨勫瓧娈靛��
+ Sensor data = dataSensors[i];
+ if (i < dataSensors.length - 1) {
+ sb.append(data).append("," + "\t");
+ } else {
+ sb.append(data).append(" ");
+ }
+ //姝ゆ椂涓嶅仛鍒ゆ柇浼氬彂鐢熺┖鎸囬拡寮傚父 瀹氫箟鐨刪5鏂囦欢琛屾暟鍥哄畾锛屽悇涓枃浠惰鏁颁笉鍚�
+ if (null != data) {
+ pw.print(data.toString() + "\n");
+ }
+ }
+ pw.close();
+ } catch (FileNotFoundException | UnsupportedEncodingException e) {
+ e.printStackTrace();
+ }
+ }
+
+ public static void main(String[] args) {
+ H5ReadHelper.ReadDataset("D:/tongzhou.h5");
+ }
+}
+
diff --git a/src/main/java/com/se/simu/service/IBizH5FileParserService.java b/src/main/java/com/se/simu/service/IBizH5FileParserService.java
index 3b4ae8e..d23f50f 100644
--- a/src/main/java/com/se/simu/service/IBizH5FileParserService.java
+++ b/src/main/java/com/se/simu/service/IBizH5FileParserService.java
@@ -16,7 +16,7 @@
* @param filePath 鏂囦欢璺緞
* @return 鏂囦欢ID
*/
- long openH5File(String filePath) throws HDF5LibraryException;
+ long openH5File(String filePath) ;
/**
diff --git a/src/main/java/com/se/simu/service/Impl/BizH5FileParserServiceImpl.java b/src/main/java/com/se/simu/service/Impl/BizH5FileParserServiceImpl.java
index 5cd6f5e..8268f8c 100644
--- a/src/main/java/com/se/simu/service/Impl/BizH5FileParserServiceImpl.java
+++ b/src/main/java/com/se/simu/service/Impl/BizH5FileParserServiceImpl.java
@@ -7,14 +7,31 @@
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.springframework.stereotype.Service;
+import java.util.HashMap;
+import java.util.Map;
+
@Service
public class BizH5FileParserServiceImpl implements IBizH5FileParserService {
@Override
- public long openH5File(String filePath) throws HDF5LibraryException {
- long fileId = H5.H5Fopen(filePath, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- return fileId;
+ public long openH5File(String filePath) {
+ int hdf5File = -1;
+ try {
+ hdf5File = H5.H5Fopen(filePath, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
+ // 鍦ㄨ繖閲岃繘琛屾枃浠舵搷浣�
+ } catch (Exception e) {
+ e.printStackTrace();
+ } finally {
+ if (hdf5File >= 0) {
+ try {
+ H5.H5Fclose(hdf5File);
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ }
+ }
+ return hdf5File;
}
@Override
diff --git a/src/main/java/hdf/hdf5lib/H5.java b/src/main/java/hdf/hdf5lib/H5.java
new file mode 100644
index 0000000..c0122da
--- /dev/null
+++ b/src/main/java/hdf/hdf5lib/H5.java
@@ -0,0 +1,2399 @@
+//
+// Source code recreated from a .class file by IntelliJ IDEA
+// (powered by FernFlower decompiler)
+//
+
+package hdf.hdf5lib;
+
+import hdf.hdf5lib.callbacks.H5A_iterate_cb;
+import hdf.hdf5lib.callbacks.H5A_iterate_t;
+import hdf.hdf5lib.callbacks.H5D_iterate_cb;
+import hdf.hdf5lib.callbacks.H5D_iterate_t;
+import hdf.hdf5lib.callbacks.H5E_walk_cb;
+import hdf.hdf5lib.callbacks.H5E_walk_t;
+import hdf.hdf5lib.callbacks.H5L_iterate_cb;
+import hdf.hdf5lib.callbacks.H5L_iterate_t;
+import hdf.hdf5lib.callbacks.H5O_iterate_cb;
+import hdf.hdf5lib.callbacks.H5O_iterate_t;
+import hdf.hdf5lib.callbacks.H5P_iterate_cb;
+import hdf.hdf5lib.callbacks.H5P_iterate_t;
+import hdf.hdf5lib.exceptions.HDF5Exception;
+import hdf.hdf5lib.exceptions.HDF5JavaException;
+import hdf.hdf5lib.exceptions.HDF5LibraryException;
+import hdf.hdf5lib.structs.H5AC_cache_config_t;
+import hdf.hdf5lib.structs.H5A_info_t;
+import hdf.hdf5lib.structs.H5F_info_t;
+import hdf.hdf5lib.structs.H5G_info_t;
+import hdf.hdf5lib.structs.H5L_info_t;
+import hdf.hdf5lib.structs.H5O_info_t;
+import java.io.File;
+import java.io.Serializable;
+import java.nio.ByteBuffer;
+import java.util.Collection;
+import java.util.LinkedHashSet;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+public class H5 implements Serializable {
+ private static final long serialVersionUID = 6129888282117053288L;
+ private static final Logger log = LoggerFactory.getLogger(H5.class);
+ public static final int[] LIB_VERSION = new int[]{1, 8, 19};
+ public static final String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib";
+ public static final String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName";
+ private static String s_libraryName;
+ private static boolean isLibraryLoaded = false;
+ private static final boolean IS_CRITICAL_PINNING = true;
+ private static final LinkedHashSet<Integer> OPEN_IDS = new LinkedHashSet();
+
+ public H5() {
+ }
+
+ public static void loadH5Lib() {
+ if (!isLibraryLoaded) {
+// System.setProperty("hdf.hdf5lib.H5.loadLibraryName", "hdf5");
+ s_libraryName = System.getProperty("hdf.hdf5lib.H5.loadLibraryName", (String)null);
+ String var0 = null;
+ if (s_libraryName != null && s_libraryName.length() > 0) {
+ try {
+ var0 = System.mapLibraryName(s_libraryName);
+ System.loadLibrary(s_libraryName);
+ isLibraryLoaded = true;
+ } catch (Throwable var30) {
+ var30.printStackTrace();
+ isLibraryLoaded = false;
+ } finally {
+ log.info("HDF5 library: " + s_libraryName);
+ log.debug(" resolved to: " + var0 + "; ");
+ log.info((isLibraryLoaded ? "" : " NOT") + " successfully loaded from system property");
+ }
+ }
+
+ if (!isLibraryLoaded) {
+ String var1 = System.getProperty("hdf.hdf5lib.H5.hdf5lib", (String)null);
+ if (var1 != null && var1.length() > 0) {
+ File var2 = new File(var1);
+ if (!var2.exists() || !var2.canRead() || !var2.isFile()) {
+ isLibraryLoaded = false;
+ throw new UnsatisfiedLinkError("Invalid HDF5 library, " + var1);
+ }
+
+ try {
+ System.load(var1);
+ isLibraryLoaded = true;
+ } catch (Throwable var29) {
+ var29.printStackTrace();
+ isLibraryLoaded = false;
+ } finally {
+ log.info("HDF5 library: ");
+ log.debug(var1);
+ log.info((isLibraryLoaded ? "" : " NOT") + " successfully loaded.");
+ }
+ }
+ }
+
+ if (!isLibraryLoaded) {
+ try {
+ s_libraryName = "jhdf5";
+ var0 = System.mapLibraryName(s_libraryName);
+ System.loadLibrary("jhdf5");
+ isLibraryLoaded = true;
+ } catch (Throwable var28) {
+ var28.printStackTrace();
+ isLibraryLoaded = false;
+ } finally {
+ log.info("HDF5 library: " + s_libraryName);
+ log.debug(" resolved to: " + var0 + "; ");
+ log.info((isLibraryLoaded ? "" : " NOT") + " successfully loaded from java.library.path");
+ }
+ }
+
+ try {
+ H5dont_atexit();
+ } catch (HDF5LibraryException var27) {
+ System.exit(1);
+ }
+
+ if (!log.isDebugEnabled()) {
+ H5error_off();
+ }
+
+ Integer var34 = Integer.getInteger("hdf.hdf5lib.H5.hdf5maj", (Integer)null);
+ Integer var35 = Integer.getInteger("hdf.hdf5lib.H5.hdf5min", (Integer)null);
+ Integer var3 = Integer.getInteger("hdf.hdf5lib.H5.hdf5rel", (Integer)null);
+ if (var34 != null && var35 != null && var3 != null) {
+ H5check_version(var34, var35, var3);
+ }
+
+ }
+ }
+
+ public static final int getOpenIDCount() {
+ return OPEN_IDS.size();
+ }
+
+ /** @deprecated */
+ @Deprecated
+ public static final int getOpenID(int var0) {
+ byte var1 = -1;
+ return var1;
+ }
+
+ public static final Collection<Integer> getOpenIDs() {
+ return OPEN_IDS;
+ }
+
+ public static synchronized native int H5check_version(int var0, int var1, int var2);
+
+ public static synchronized native int H5close() throws HDF5LibraryException;
+
+ public static synchronized native int H5open() throws HDF5LibraryException;
+
+ private static synchronized native int H5dont_atexit() throws HDF5LibraryException;
+
+ public static synchronized native int H5error_off();
+
+ public static synchronized native int H5garbage_collect() throws HDF5LibraryException;
+
+ public static synchronized native int H5get_libversion(int[] var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5set_free_list_limits(int var0, int var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException;
+
+ public static synchronized native void H5export_dataset(String var0, String var1, String var2, int var3) throws HDF5LibraryException;
+
+ private static synchronized native boolean H5is_library_threadsafe();
+
+ public static int H5Aclose(int var0) throws HDF5LibraryException {
+ if (var0 < 0) {
+ return 0;
+ } else {
+ log.trace("OPEN_IDS: H5Aclose remove {}", var0);
+ OPEN_IDS.remove(var0);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Aclose(var0);
+ }
+ }
+
+ private static synchronized native int _H5Aclose(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Acopy(int var0, int var1) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Acreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException {
+ int var5 = _H5Acreate(var0, var1, var2, var3, var4);
+ if (var5 > 0) {
+ log.trace("OPEN_IDS: H5A add {}", var5);
+ OPEN_IDS.add(var5);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var5;
+ }
+
+ private static synchronized native int _H5Acreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Acreate(int var0, String var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException, NullPointerException {
+ int var6 = _H5Acreate2(var0, var1, var2, var3, var4, var5);
+ if (var6 > 0) {
+ log.trace("OPEN_IDS: H5A create add {}", var6);
+ OPEN_IDS.add(var6);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var6;
+ }
+
+ private static synchronized native int _H5Acreate2(int var0, String var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Acreate_by_name(int var0, String var1, String var2, int var3, int var4, int var5, int var6, int var7) throws HDF5LibraryException, NullPointerException {
+ int var8 = _H5Acreate_by_name(var0, var1, var2, var3, var4, var5, var6, var7);
+ if (var8 > 0) {
+ log.trace("OPEN_IDS: H5Acreate_by_name add {}", var8);
+ OPEN_IDS.add(var8);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var8;
+ }
+
+ private static synchronized native int _H5Acreate_by_name(int var0, String var1, String var2, int var3, int var4, int var5, int var6, int var7) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Adelete(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Adelete_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Adelete_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Aexists(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Aexists_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native H5A_info_t H5Aget_info(int var0) throws HDF5LibraryException;
+
+ public static synchronized native H5A_info_t H5Aget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native H5A_info_t H5Aget_info_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native String H5Aget_name(int var0) throws HDF5LibraryException;
+
+ public static synchronized native String H5Aget_name_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Aget_num_attrs(int var0) throws HDF5LibraryException;
+
+ public static int H5Aget_space(int var0) throws HDF5LibraryException {
+ int var1 = _H5Aget_space(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Aget_space add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Aget_space(int var0) throws HDF5LibraryException;
+
+ public static synchronized native long H5Aget_storage_size(int var0) throws HDF5LibraryException;
+
+ public static int H5Aget_type(int var0) throws HDF5LibraryException {
+ int var1 = _H5Aget_type(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Aget_type add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Aget_type(int var0) throws HDF5LibraryException;
+
+ public static int H5Aopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
+ int var3 = _H5Aopen(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Aopen add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Aopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Aopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6, int var7) throws HDF5LibraryException, NullPointerException {
+ int var8 = _H5Aopen_by_idx(var0, var1, var2, var3, var4, var6, var7);
+ if (var8 > 0) {
+ log.trace("OPEN_IDS: H5Aopen_by_idx add {}", var8);
+ OPEN_IDS.add(var8);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var8;
+ }
+
+ private static synchronized native int _H5Aopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6, int var7) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Aopen_by_name(int var0, String var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException {
+ int var5 = _H5Aopen_by_name(var0, var1, var2, var3, var4);
+ if (var5 > 0) {
+ log.trace("OPEN_IDS: H5Aopen_by_name add {}", var5);
+ OPEN_IDS.add(var5);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var5;
+ }
+
+ private static synchronized native int _H5Aopen_by_name(int var0, String var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Aopen_idx(int var0, int var1) throws HDF5LibraryException {
+ int var2 = _H5Aopen_idx(var0, var1);
+ if (var2 > 0) {
+ log.trace("OPEN_IDS: H5A add {}", var2);
+ OPEN_IDS.add(var2);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var2;
+ }
+
+ private static synchronized native int _H5Aopen_idx(int var0, int var1) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Aopen_name(int var0, String var1) throws HDF5LibraryException, NullPointerException {
+ int var2 = _H5Aopen_name(var0, var1);
+ if (var2 > 0) {
+ log.trace("OPEN_IDS: H5A add {}", var2);
+ OPEN_IDS.add(var2);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var2;
+ }
+
+ private static synchronized native int _H5Aopen_name(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Aread(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Aread(int var0, int var1, Object var2) throws HDF5Exception, NullPointerException {
+ HDFArray var3 = new HDFArray(var2);
+ byte[] var4 = var3.emptyBytes();
+ int var5 = H5Aread(var0, var1, var4);
+ if (var5 >= 0) {
+ var3.arrayify(var4);
+ }
+
+ return var5;
+ }
+
+ public static synchronized native int H5AreadVL(int var0, int var1, String[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5AreadComplex(int var0, int var1, String[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Arename(int var0, String var1, String var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Arename_by_name(int var0, String var1, String var2, String var3, int var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Awrite(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Awrite(int var0, int var1, Object var2) throws HDF5Exception, NullPointerException {
+ HDFArray var3 = new HDFArray(var2);
+ byte[] var4 = var3.byteify();
+ int var5 = H5Awrite(var0, var1, var4);
+ Object var6 = null;
+ var3 = null;
+ return var5;
+ }
+
+ public static synchronized native int H5AwriteVL(int var0, int var1, String[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Aget_create_plist(int var0) throws HDF5LibraryException {
+ int var1 = _H5Aget_create_plist(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Aget_create_plist add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Aget_create_plist(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Aiterate(int var0, int var1, int var2, long var3, H5A_iterate_cb var5, H5A_iterate_t var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Aiterate_by_name(int var0, String var1, int var2, int var3, long var4, H5A_iterate_cb var6, H5A_iterate_t var7, int var8) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Dcopy(int var0, int var1) throws HDF5LibraryException;
+
+ public static int H5Dclose(int var0) throws HDF5LibraryException {
+ if (var0 < 0) {
+ return 0;
+ } else {
+ log.trace("OPEN_IDS: H5Dclose remove {}", var0);
+ OPEN_IDS.remove(var0);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Dclose(var0);
+ }
+ }
+
+ private static synchronized native int _H5Dclose(int var0) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Dcreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException {
+ int var5 = _H5Dcreate(var0, var1, var2, var3, var4);
+ if (var5 > 0) {
+ log.trace("OPEN_IDS: H5D add {}", var5);
+ OPEN_IDS.add(var5);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var5;
+ }
+
+ private static synchronized native int _H5Dcreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Dcreate(int var0, String var1, int var2, int var3, int var4, int var5, int var6) throws HDF5LibraryException, NullPointerException {
+ int var7 = _H5Dcreate2(var0, var1, var2, var3, var4, var5, var6);
+ if (var7 > 0) {
+ log.trace("OPEN_IDS: H5Dcreate add {}", var7);
+ OPEN_IDS.add(var7);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var7;
+ }
+
+ private static synchronized native int _H5Dcreate2(int var0, String var1, int var2, int var3, int var4, int var5, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Dcreate_anon(int var0, int var1, int var2, int var3, int var4) throws HDF5LibraryException {
+ int var5 = _H5Dcreate_anon(var0, var1, var2, var3, var4);
+ if (var5 > 0) {
+ log.trace("OPEN_IDS: H5Dcreate_anon add {}", var5);
+ OPEN_IDS.add(var5);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var5;
+ }
+
+ private static synchronized native int _H5Dcreate_anon(int var0, int var1, int var2, int var3, int var4) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Dextend(int var0, byte[] var1) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized int H5Dextend(int var0, long[] var1) throws HDF5Exception, NullPointerException {
+ boolean var2 = true;
+ HDFArray var3 = new HDFArray(var1);
+ byte[] var4 = var3.byteify();
+ int var5 = H5Dextend(var0, var4);
+ Object var6 = null;
+ var3 = null;
+ return var5;
+ }
+
+ public static synchronized native void H5Dfill(byte[] var0, int var1, byte[] var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Dget_access_plist(int var0) throws HDF5LibraryException;
+
+ public static int H5Dget_create_plist(int var0) throws HDF5LibraryException {
+ int var1 = _H5Dget_create_plist(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Dget_create_plist add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Dget_create_plist(int var0) throws HDF5LibraryException;
+
+ public static synchronized native long H5Dget_offset(int var0) throws HDF5LibraryException;
+
+ public static int H5Dget_space(int var0) throws HDF5LibraryException {
+ int var1 = _H5Dget_space(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Dget_space add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Dget_space(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Dget_space_status(int var0) throws HDF5LibraryException;
+
+ public static int H5Dget_space_status(int var0, int[] var1) throws HDF5LibraryException, NullPointerException {
+ return _H5Dget_space_status(var0, var1);
+ }
+
+ private static synchronized native int _H5Dget_space_status(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native long H5Dget_storage_size(int var0) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static int H5Dget_type(int var0) throws HDF5LibraryException {
+ int var1 = _H5Dget_type(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Dget_type add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Dget_type(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Diterate(byte[] var0, int var1, int var2, H5D_iterate_cb var3, H5D_iterate_t var4) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Dopen(int var0, String var1) throws HDF5LibraryException, NullPointerException {
+ int var2 = _H5Dopen(var0, var1);
+ if (var2 > 0) {
+ log.trace("OPEN_IDS: H5D add {}", var2);
+ OPEN_IDS.add(var2);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var2;
+ }
+
+ private static synchronized native int _H5Dopen(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Dopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
+ int var3 = _H5Dopen2(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Dopen add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Dopen2(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Dread(int var0, int var1, int var2, int var3, int var4, byte[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dread(int var0, int var1, int var2, int var3, int var4, byte[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dread(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized int H5Dread(int var0, int var1, int var2, int var3, int var4, Object var5) throws HDF5Exception, HDF5LibraryException, NullPointerException {
+ return H5Dread(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized int H5Dread(int var0, int var1, int var2, int var3, int var4, Object var5, boolean var6) throws HDF5Exception, HDF5LibraryException, NullPointerException {
+ boolean var7 = true;
+ boolean var8 = false;
+ Class var9 = var5.getClass();
+ if (!var9.isArray()) {
+ throw new HDF5JavaException("H5Dread: data is not an array");
+ } else {
+ String var10 = var9.getName();
+ var8 = var10.lastIndexOf(91) == var10.indexOf(91);
+ char var11 = var10.charAt(var10.lastIndexOf("[") + 1);
+ log.trace("H5Dread: cname={} is1D={} dname={}", new Object[]{var10, var8, var11});
+ int var14;
+ if (var8 && var11 == 'B') {
+ log.trace("H5Dread_dname_B");
+ var14 = H5Dread(var0, var1, var2, var3, var4, (byte[])((byte[])var5), var6);
+ } else if (var8 && var11 == 'S') {
+ log.trace("H5Dread_dname_S");
+ var14 = H5Dread_short(var0, var1, var2, var3, var4, (short[])((short[])var5), var6);
+ } else if (var8 && var11 == 'I') {
+ log.trace("H5Dread_dname_I");
+ var14 = H5Dread_int(var0, var1, var2, var3, var4, (int[])((int[])var5), var6);
+ } else if (var8 && var11 == 'J') {
+ log.trace("H5Dread_dname_J");
+ var14 = H5Dread_long(var0, var1, var2, var3, var4, (long[])((long[])var5));
+ } else if (var8 && var11 == 'F') {
+ log.trace("H5Dread_dname_F");
+ var14 = H5Dread_float(var0, var1, var2, var3, var4, (float[])((float[])var5), var6);
+ } else if (var8 && var11 == 'D') {
+ log.trace("H5Dread_dname_D");
+ var14 = H5Dread_double(var0, var1, var2, var3, var4, (double[])((double[])var5), var6);
+ } else if (H5Tequal(var1, HDF5Constants.H5T_STD_REF_DSETREG)) {
+ log.trace("H5Dread_reg_ref");
+ var14 = H5Dread_reg_ref(var0, var1, var2, var3, var4, (String[])((String[])var5));
+ } else if (var8 && var9.getComponentType() == String.class) {
+ log.trace("H5Dread_string type");
+ if (H5Tis_variable_str(var1)) {
+ var14 = H5DreadVL(var0, var1, var2, var3, var4, (Object[])((Object[])var5));
+ } else {
+ var14 = H5Dread_string(var0, var1, var2, var3, var4, (String[])((String[])var5));
+ }
+ } else {
+ HDFArray var12 = new HDFArray(var5);
+ byte[] var13 = var12.emptyBytes();
+ log.trace("H5Dread_else");
+ var14 = H5Dread(var0, var1, var2, var3, var4, var13, var6);
+ if (var14 >= 0) {
+ var12.arrayify(var13);
+ }
+
+ Object var15 = null;
+ var12 = null;
+ }
+
+ return var14;
+ }
+ }
+
+ public static synchronized native int H5Dread_double(int var0, int var1, int var2, int var3, int var4, double[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dread_double(int var0, int var1, int var2, int var3, int var4, double[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dread_double(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5Dread_float(int var0, int var1, int var2, int var3, int var4, float[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dread_float(int var0, int var1, int var2, int var3, int var4, float[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dread_float(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5Dread_int(int var0, int var1, int var2, int var3, int var4, int[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dread_int(int var0, int var1, int var2, int var3, int var4, int[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dread_int(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5Dread_long(int var0, int var1, int var2, int var3, int var4, long[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dread_long(int var0, int var1, int var2, int var3, int var4, long[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dread_long(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5Dread_reg_ref(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Dread_reg_ref_data(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Dread_short(int var0, int var1, int var2, int var3, int var4, short[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dread_short(int var0, int var1, int var2, int var3, int var4, short[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dread_short(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5Dread_string(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5DreadVL(int var0, int var1, int var2, int var3, int var4, Object[] var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Dset_extent(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Dvlen_get_buf_size(int var0, int var1, int var2, int[] var3) throws HDF5LibraryException;
+
+ public static synchronized native long H5Dvlen_get_buf_size_long(int var0, int var1, int var2) throws HDF5LibraryException;
+
+ public static synchronized native int H5Dvlen_reclaim(int var0, int var1, int var2, byte[] var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Dwrite(int var0, int var1, int var2, int var3, int var4, byte[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dwrite(int var0, int var1, int var2, int var3, int var4, byte[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dwrite(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized int H5Dwrite(int var0, int var1, int var2, int var3, int var4, Object var5) throws HDF5Exception, HDF5LibraryException, NullPointerException {
+ return H5Dwrite(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized int H5Dwrite(int var0, int var1, int var2, int var3, int var4, Object var5, boolean var6) throws HDF5Exception, HDF5LibraryException, NullPointerException {
+ boolean var7 = true;
+ boolean var8 = false;
+ Class var9 = var5.getClass();
+ if (!var9.isArray()) {
+ throw new HDF5JavaException("H5Dread: data is not an array");
+ } else {
+ String var10 = var9.getName();
+ var8 = var10.lastIndexOf(91) == var10.indexOf(91);
+ char var11 = var10.charAt(var10.lastIndexOf("[") + 1);
+ int var14;
+ if (var8 && var11 == 'B') {
+ var14 = H5Dwrite(var0, var1, var2, var3, var4, (byte[])((byte[])var5), var6);
+ } else if (var8 && var11 == 'S') {
+ var14 = H5Dwrite_short(var0, var1, var2, var3, var4, (short[])((short[])var5), var6);
+ } else if (var8 && var11 == 'I') {
+ var14 = H5Dwrite_int(var0, var1, var2, var3, var4, (int[])((int[])var5), var6);
+ } else if (var8 && var11 == 'J') {
+ var14 = H5Dwrite_long(var0, var1, var2, var3, var4, (long[])((long[])var5), var6);
+ } else if (var8 && var11 == 'F') {
+ var14 = H5Dwrite_float(var0, var1, var2, var3, var4, (float[])((float[])var5), var6);
+ } else if (var8 && var11 == 'D') {
+ var14 = H5Dwrite_double(var0, var1, var2, var3, var4, (double[])((double[])var5), var6);
+ } else if (H5Tget_class(var1) == HDF5Constants.H5T_STRING && H5Tis_variable_str(var1) && var9.isArray() && var9.getComponentType() == String.class && var8) {
+ var14 = H5DwriteString(var0, var1, var2, var3, var4, (String[])((String[])var5));
+ } else {
+ HDFArray var12 = new HDFArray(var5);
+ byte[] var13 = var12.byteify();
+ var14 = H5Dwrite(var0, var1, var2, var3, var4, var13, var6);
+ Object var15 = null;
+ var12 = null;
+ }
+
+ return var14;
+ }
+ }
+
+ public static synchronized native int H5Dwrite_double(int var0, int var1, int var2, int var3, int var4, double[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dwrite_double(int var0, int var1, int var2, int var3, int var4, double[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dwrite_double(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5Dwrite_float(int var0, int var1, int var2, int var3, int var4, float[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dwrite_float(int var0, int var1, int var2, int var3, int var4, float[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dwrite_float(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5Dwrite_int(int var0, int var1, int var2, int var3, int var4, int[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dwrite_int(int var0, int var1, int var2, int var3, int var4, int[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dwrite_int(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5Dwrite_long(int var0, int var1, int var2, int var3, int var4, long[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dwrite_long(int var0, int var1, int var2, int var3, int var4, long[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dwrite_long(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5Dwrite_short(int var0, int var1, int var2, int var3, int var4, short[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Dwrite_short(int var0, int var1, int var2, int var3, int var4, short[] var5) throws HDF5LibraryException, NullPointerException {
+ return H5Dwrite_short(var0, var1, var2, var3, var4, var5, true);
+ }
+
+ public static synchronized native int H5DwriteString(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Eauto_is_v2(int var0) throws HDF5LibraryException;
+
+ public static int H5Eclear() throws HDF5LibraryException {
+ H5Eclear2(HDF5Constants.H5E_DEFAULT);
+ return 0;
+ }
+
+ public static void H5Eclear(int var0) throws HDF5LibraryException {
+ H5Eclear2(var0);
+ }
+
+ public static synchronized native void H5Eclear2(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Eclose_msg(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Eclose_stack(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Ecreate_msg(int var0, int var1, String var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Ecreate_stack() throws HDF5LibraryException;
+
+ public static synchronized native String H5Eget_class_name(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Eget_current_stack() throws HDF5LibraryException;
+
+ public static synchronized native void H5Eset_current_stack(int var0) throws HDF5LibraryException;
+
+ public static synchronized native String H5Eget_msg(int var0, int[] var1) throws HDF5LibraryException;
+
+ public static synchronized native long H5Eget_num(int var0) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native void H5Eprint1(Object var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Eprint2(int var0, Object var1) throws HDF5LibraryException;
+
+ public static synchronized native void H5Epop(int var0, long var1) throws HDF5LibraryException;
+
+ public static void H5Epush(int var0, String var1, String var2, int var3, int var4, int var5, int var6, String var7) throws HDF5LibraryException, NullPointerException {
+ H5Epush2(var0, var1, var2, var3, var4, var5, var6, var7);
+ }
+
+ public static synchronized native void H5Epush2(int var0, String var1, String var2, int var3, int var4, int var5, int var6, String var7) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Eregister_class(String var0, String var1, String var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Eunregister_class(int var0) throws HDF5LibraryException;
+
+ public static void H5Ewalk(int var0, int var1, H5E_walk_cb var2, H5E_walk_t var3) throws HDF5LibraryException, NullPointerException {
+ H5Ewalk2(var0, var1, var2, var3);
+ }
+
+ public static synchronized native void H5Ewalk2(int var0, int var1, H5E_walk_cb var2, H5E_walk_t var3) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Fclose(int var0) throws HDF5LibraryException {
+ if (var0 < 0) {
+ return 0;
+ } else {
+ log.trace("OPEN_IDS: H5Fclose remove {}", var0);
+ OPEN_IDS.remove(var0);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Fclose(var0);
+ }
+ }
+
+ private static synchronized native int _H5Fclose(int var0) throws HDF5LibraryException;
+
+ public static int H5Fopen(String var0, int var1, int var2) throws HDF5LibraryException, NullPointerException {
+ int var3 = _H5Fopen(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Fopen add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Fopen(String var0, int var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Freopen(int var0) throws HDF5LibraryException {
+ int var1 = _H5Freopen(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Freopen add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Freopen(int var0) throws HDF5LibraryException;
+
+ public static int H5Fcreate(String var0, int var1, int var2, int var3) throws HDF5LibraryException, NullPointerException {
+ int var4 = _H5Fcreate(var0, var1, var2, var3);
+ if (var4 > 0) {
+ log.trace("OPEN_IDS: H5Fcreate add {}", var4);
+ OPEN_IDS.add(var4);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var4;
+ }
+
+ private static synchronized native int _H5Fcreate(String var0, int var1, int var2, int var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Fflush(int var0, int var1) throws HDF5LibraryException;
+
+ public static int H5Fget_access_plist(int var0) throws HDF5LibraryException {
+ int var1 = _H5Fget_access_plist(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Fget_access_plist add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Fget_access_plist(int var0) throws HDF5LibraryException;
+
+ public static int H5Fget_create_plist(int var0) throws HDF5LibraryException {
+ int var1 = _H5Fget_create_plist(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Fget_create_plist add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Fget_create_plist(int var0) throws HDF5LibraryException;
+
+ public static synchronized native long H5Fget_filesize(int var0) throws HDF5LibraryException;
+
+ public static synchronized native long H5Fget_freespace(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Fget_intent(int var0) throws HDF5LibraryException;
+
+ public static synchronized native double H5Fget_mdc_hit_rate(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Fget_mdc_size(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native String H5Fget_name(int var0) throws HDF5LibraryException;
+
+ public static synchronized native String H5Fget_name(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Fget_obj_count(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native long H5Fget_obj_count_long(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Fget_obj_ids(int var0, int var1, int var2, int[] var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native long H5Fget_obj_ids_long(int var0, int var1, long var2, int[] var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Fis_hdf5(String var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Fmount(int var0, String var1, int var2, int var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Funmount(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Freset_mdc_hit_rate_stats(int var0) throws HDF5LibraryException;
+
+ public static synchronized native H5F_info_t H5Fget_info(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Fclear_elink_file_cache(int var0) throws HDF5LibraryException;
+
+ public static int H5Gclose(int var0) throws HDF5LibraryException {
+ if (var0 < 0) {
+ return 0;
+ } else {
+ log.trace("OPEN_IDS: H5Gclose remove {}", var0);
+ OPEN_IDS.remove(var0);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Gclose(var0);
+ }
+ }
+
+ private static synchronized native int _H5Gclose(int var0) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Gcreate(int var0, String var1, long var2) throws HDF5LibraryException, NullPointerException {
+ int var4 = _H5Gcreate(var0, var1, var2);
+ if (var4 > 0) {
+ log.trace("OPEN_IDS: H5Gcreate add {}", var4);
+ OPEN_IDS.add(var4);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var4;
+ }
+
+ private static synchronized native int _H5Gcreate(int var0, String var1, long var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Gcreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException {
+ int var5 = _H5Gcreate2(var0, var1, var2, var3, var4);
+ if (var5 > 0) {
+ log.trace("OPEN_IDS: H5Gcreate add {}", var5);
+ OPEN_IDS.add(var5);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var5;
+ }
+
+ private static synchronized native int _H5Gcreate2(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Gcreate_anon(int var0, int var1, int var2) throws HDF5LibraryException {
+ int var3 = _H5Gcreate_anon(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Gcreate_anon add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Gcreate_anon(int var0, int var1, int var2) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Gget_comment(int var0, String var1, int var2, String[] var3) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Gset_comment(int var0, String var1, String var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Gget_create_plist(int var0) throws HDF5LibraryException;
+
+ public static synchronized native H5G_info_t H5Gget_info(int var0) throws HDF5LibraryException;
+
+ public static synchronized native H5G_info_t H5Gget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native H5G_info_t H5Gget_info_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Gget_linkval(int var0, String var1, int var2, String[] var3) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Gget_num_objs(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Gget_obj_info_all(int var0, String var1, String[] var2, int[] var3, long[] var4) throws HDF5LibraryException, NullPointerException {
+ if (var2 == null) {
+ throw new NullPointerException("H5Gget_obj_info_all(): name array is null");
+ } else {
+ return H5Gget_obj_info_all(var0, var1, var2, var3, (int[])null, (long[])null, var4, HDF5Constants.H5_INDEX_NAME);
+ }
+ }
+
+ public static synchronized int H5Gget_obj_info_all(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, int var6) throws HDF5LibraryException, NullPointerException {
+ return H5Gget_obj_info_full(var0, var1, var2, var3, var4, (long[])null, var5, var6, -1);
+ }
+
+ public static synchronized int H5Gget_obj_info_all(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, long[] var6, int var7) throws HDF5LibraryException, NullPointerException {
+ return H5Gget_obj_info_full(var0, var1, var2, var3, var4, var5, var6, var2.length, var7, -1);
+ }
+
+ public static synchronized int H5Gget_obj_info_full(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, long[] var6, int var7, int var8) throws HDF5LibraryException, NullPointerException {
+ if (var2 == null) {
+ throw new NullPointerException("H5Gget_obj_info_full(): name array is null");
+ } else if (var3 == null) {
+ throw new NullPointerException("H5Gget_obj_info_full(): object type array is null");
+ } else if (var2.length == 0) {
+ throw new HDF5LibraryException("H5Gget_obj_info_full(): array size is zero");
+ } else if (var2.length != var3.length) {
+ throw new HDF5LibraryException("H5Gget_obj_info_full(): name and type array sizes are different");
+ } else {
+ if (var4 == null) {
+ var4 = new int[var3.length];
+ }
+
+ if (var5 == null) {
+ var5 = new long[var6.length];
+ }
+
+ if (var7 < 0) {
+ var7 = HDF5Constants.H5_INDEX_NAME;
+ }
+
+ if (var8 < 0) {
+ var8 = HDF5Constants.H5_ITER_INC;
+ }
+
+ log.trace("H5Gget_obj_info_full: oname_len={}", var2.length);
+ int var9 = H5Gget_obj_info_full(var0, var1, var2, var3, var4, var5, var6, var2.length, var7, var8);
+
+ for(int var10 = 0; var10 < var2.length; ++var10) {
+ log.trace("H5Gget_obj_info_full: oname={}", var2[var10]);
+ }
+
+ return var9;
+ }
+ }
+
+ private static synchronized native int H5Gget_obj_info_full(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, long[] var6, int var7, int var8, int var9) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Gget_obj_info_idx(int var0, String var1, int var2, String[] var3, int[] var4) throws HDF5LibraryException, NullPointerException {
+ long var5 = 4096L;
+ String[] var7 = new String[]{new String("")};
+ int var8 = H5Gopen(var0, var1);
+ long var9 = H5Gget_objname_by_idx(var8, (long)var2, var7, var5);
+ int var11 = H5Gget_objtype_by_idx(var8, (long)var2);
+ var3[0] = new String(var7[0]);
+ var4[0] = var11;
+ int var12 = (new Long(var9)).intValue();
+ return var12;
+ }
+
+ public static synchronized int H5Gget_obj_info_max(int var0, String[] var1, int[] var2, int[] var3, long[] var4, int var5) throws HDF5LibraryException, NullPointerException {
+ if (var1 == null) {
+ throw new NullPointerException("H5Gget_obj_info_max(): name array is null");
+ } else if (var2 == null) {
+ throw new NullPointerException("H5Gget_obj_info_max(): object type array is null");
+ } else if (var3 == null) {
+ throw new NullPointerException("H5Gget_obj_info_max(): link type array is null");
+ } else if (var1.length <= 0) {
+ throw new HDF5LibraryException("H5Gget_obj_info_max(): array size is zero");
+ } else if (var5 <= 0) {
+ throw new HDF5LibraryException("H5Gget_obj_info_max(): maximum array size is zero");
+ } else if (var1.length != var2.length) {
+ throw new HDF5LibraryException("H5Gget_obj_info_max(): name and type array sizes are different");
+ } else {
+ return H5Gget_obj_info_max(var0, var1, var2, var3, var4, var5, var1.length);
+ }
+ }
+
+ private static synchronized native int H5Gget_obj_info_max(int var0, String[] var1, int[] var2, int[] var3, long[] var4, int var5, int var6) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Gget_objinfo(int var0, String var1, boolean var2, long[] var3, long[] var4, int[] var5, long[] var6) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized int H5Gget_objinfo(int var0, String var1, boolean var2, HDF5GroupInfo var3) throws HDF5LibraryException, NullPointerException {
+ boolean var4 = true;
+ long[] var5 = new long[2];
+ long[] var6 = new long[2];
+ int[] var7 = new int[3];
+ long[] var8 = new long[1];
+ int var9 = H5Gget_objinfo(var0, var1, var2, var5, var6, var7, var8);
+ if (var9 >= 0) {
+ var3.setGroupInfo(var5, var6, var7[0], var7[1], var8[0], var7[2]);
+ }
+
+ return var9;
+ }
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native long H5Gget_objname_by_idx(int var0, long var1, String[] var3, long var4) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Gget_objtype_by_idx(int var0, long var1) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Glink(int var0, int var1, String var2, String var3) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Glink2(int var0, String var1, int var2, int var3, String var4) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Gunlink(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Gmove(int var0, String var1, String var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized long H5Gn_members_long(int var0, String var1) throws HDF5LibraryException, NullPointerException {
+ int var2 = H5Gopen(var0, var1);
+ long var3 = -1L;
+
+ try {
+ H5G_info_t var5 = H5Gget_info(var2);
+ var3 = var5.nlinks;
+ } finally {
+ H5Gclose(var2);
+ }
+
+ return var3;
+ }
+
+ public static synchronized int H5Gn_members(int var0, String var1) throws HDF5LibraryException, NullPointerException {
+ return (int)H5Gn_members_long(var0, var1);
+ }
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Gopen(int var0, String var1) throws HDF5LibraryException, NullPointerException {
+ int var2 = _H5Gopen(var0, var1);
+ if (var2 > 0) {
+ log.trace("OPEN_IDS: H5G add {}", var2);
+ OPEN_IDS.add(var2);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var2;
+ }
+
+ private static synchronized native int _H5Gopen(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Gopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
+ int var3 = _H5Gopen2(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Gopen add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Gopen2(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Iget_file_id(int var0) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native long H5Iget_name_long(int var0, String[] var1, long var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native String H5Iget_name(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Iget_ref(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Idec_ref(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Iinc_ref(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Iget_type(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Iget_type_ref(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Idec_type_ref(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Iinc_type_ref(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Inmembers(int var0) throws HDF5LibraryException;
+
+ public static synchronized native boolean H5Iis_valid(int var0) throws HDF5LibraryException;
+
+ public static synchronized native boolean H5Itype_exists(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Iclear_type(int var0, boolean var1) throws HDF5LibraryException;
+
+ public static synchronized native void H5Idestroy_type(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Lcopy(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Lcreate_external(String var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Lcreate_hard(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Lcreate_soft(String var0, int var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Ldelete(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Ldelete_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Lexists(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native H5L_info_t H5Lget_info(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native H5L_info_t H5Lget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native String H5Lget_name_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Lget_val(int var0, String var1, String[] var2, int var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Lget_val_by_idx(int var0, String var1, int var2, int var3, long var4, String[] var6, int var7) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Literate(int var0, int var1, int var2, long var3, H5L_iterate_cb var5, H5L_iterate_t var6) throws HDF5LibraryException;
+
+ public static synchronized native int H5Literate_by_name(int var0, String var1, int var2, int var3, long var4, H5L_iterate_cb var6, H5L_iterate_t var7, int var8) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Lmove(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Lvisit(int var0, int var1, int var2, H5L_iterate_cb var3, H5L_iterate_t var4) throws HDF5LibraryException;
+
+ public static synchronized native int H5Lvisit_by_name(int var0, String var1, int var2, int var3, H5L_iterate_cb var4, H5L_iterate_t var5, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Lis_registered(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Lunregister(int var0) throws HDF5LibraryException;
+
+ public static int H5Oclose(int var0) throws HDF5LibraryException {
+ if (var0 < 0) {
+ return 0;
+ } else {
+ log.trace("OPEN_IDS: H5Oclose remove {}", var0);
+ OPEN_IDS.remove(var0);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Oclose(var0);
+ }
+ }
+
+ private static synchronized native int _H5Oclose(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Ocopy(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native String H5Oget_comment(int var0) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native void H5Oset_comment(int var0, String var1) throws HDF5LibraryException;
+
+ public static synchronized native String H5Oget_comment_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native void H5Oset_comment_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native H5O_info_t H5Oget_info(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native H5O_info_t H5Oget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native H5O_info_t H5Oget_info_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Olink(int var0, int var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Oopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
+ int var3 = _H5Oopen(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Oopen add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Oopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Ovisit(int var0, int var1, int var2, H5O_iterate_cb var3, H5O_iterate_t var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Ovisit_by_name(int var0, String var1, int var2, int var3, H5O_iterate_cb var4, H5O_iterate_t var5, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Oexists_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Odecr_refcount(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Oincr_refcount(int var0) throws HDF5LibraryException;
+
+ public static int H5Oopen_by_addr(int var0, long var1) throws HDF5LibraryException {
+ int var3 = _H5Oopen_by_addr(var0, var1);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Oopen_by_addr add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Oopen_by_addr(int var0, long var1) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Oopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException {
+ int var7 = _H5Oopen_by_idx(var0, var1, var2, var3, var4, var6);
+ if (var7 > 0) {
+ log.trace("OPEN_IDS: H5Oopen_by_idx add {}", var7);
+ OPEN_IDS.add(var7);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var7;
+ }
+
+ public static synchronized native int _H5Oopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native String H5Pget_class_name(int var0) throws HDF5LibraryException;
+
+ public static int H5Pcreate(int var0) throws HDF5LibraryException {
+ int var1 = _H5Pcreate(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Pcreate add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Pcreate(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget(int var0, String var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset(int var0, String var1, int var2) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pexist(int var0, String var1) throws HDF5LibraryException;
+
+ public static synchronized native long H5Pget_size(int var0, String var1) throws HDF5LibraryException;
+
+ public static synchronized native long H5Pget_nprops(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_class(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_class_parent(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pequal(int var0, int var1) throws HDF5LibraryException;
+
+ public static boolean H5P_equal(int var0, int var1) throws HDF5LibraryException {
+ return H5Pequal(var0, var1) == 1;
+ }
+
+ public static synchronized native int H5Pisa_class(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pcopy_prop(int var0, int var1, String var2) throws HDF5LibraryException;
+
+ public static synchronized native int H5Premove(int var0, String var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Punregister(int var0, String var1) throws HDF5LibraryException;
+
+ public static int H5Pclose_class(int var0) throws HDF5LibraryException {
+ if (var0 < 0) {
+ return 0;
+ } else {
+ log.trace("OPEN_IDS: H5Pclose_class remove {}", var0);
+ OPEN_IDS.remove(var0);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Pclose_class(var0);
+ }
+ }
+
+ public static synchronized native int _H5Pclose_class(int var0) throws HDF5LibraryException;
+
+ public static int H5Pclose(int var0) throws HDF5LibraryException {
+ if (var0 < 0) {
+ return 0;
+ } else {
+ log.trace("OPEN_IDS: H5Pclose remove {}", var0);
+ OPEN_IDS.remove(var0);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Pclose(var0);
+ }
+ }
+
+ private static synchronized native int _H5Pclose(int var0) throws HDF5LibraryException;
+
+ public static int H5Pcopy(int var0) throws HDF5LibraryException {
+ int var1 = _H5Pcopy(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Pcopy add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Pcopy(int var0) throws HDF5LibraryException;
+
+ public static int H5Pcreate_class_nocb(int var0, String var1) throws HDF5LibraryException {
+ int var2 = _H5Pcreate_class_nocb(var0, var1);
+ if (var2 > 0) {
+ log.trace("OPEN_IDS: H5Pcreate_class_nocb add {}", var2);
+ OPEN_IDS.add(var2);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var2;
+ }
+
+ private static synchronized native int _H5Pcreate_class_nocb(int var0, String var1) throws HDF5LibraryException;
+
+ public static synchronized native void H5Pregister2_nocb(int var0, String var1, long var2, byte[] var4) throws HDF5LibraryException;
+
+ public static synchronized native void H5Pinsert2_nocb(int var0, String var1, long var2, byte[] var4) throws HDF5LibraryException;
+
+ public static synchronized native int H5Piterate(int var0, int[] var1, H5P_iterate_cb var2, H5P_iterate_t var3) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_attr_phase_change(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Pset_attr_phase_change(int var0, int var1, int var2) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_attr_creation_order(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_attr_creation_order(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native boolean H5Pget_obj_track_times(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Pset_obj_track_times(int var0, boolean var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pmodify_filter(int var0, int var1, int var2, long var3, int[] var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_filter(int var0, int var1, int var2, long var3, int[] var5) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_nfilters(int var0) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Pget_filter(int var0, int var1, int[] var2, int[] var3, int[] var4, int var5, String[] var6) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException;
+
+ public static int H5Pget_filter(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException {
+ return H5Pget_filter2(var0, var1, var2, var3, var4, var5, var7, var8);
+ }
+
+ private static synchronized native int H5Pget_filter2(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Pget_filter_by_id(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Pget_filter_by_id(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException {
+ return H5Pget_filter_by_id2(var0, var1, var2, var3, var4, var5, var7, var8);
+ }
+
+ public static synchronized native int H5Pget_filter_by_id2(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Pall_filters_avail(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Premove_filter(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_deflate(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_fletcher32(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pget_userblock(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_userblock(int var0, long var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_sizes(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native int H5Pset_sizes(int var0, int var1, int var2) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_sym_k(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native int H5Pset_sym_k(int var0, int var1, int var2) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_istore_k(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_istore_k(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_shared_mesg_nindexes(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_shared_mesg_nindexes(int var0, int var1) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pget_shared_mesg_index(int var0, int var1, int[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native int H5Pset_shared_mesg_index(int var0, int var1, int var2, int var3) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pget_shared_mesg_phase_change(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_shared_mesg_phase_change(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pget_alignment(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native int H5Pset_alignment(int var0, long var1, long var3) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_driver(int var0) throws HDF5LibraryException;
+
+ public static synchronized native long H5Pget_family_offset(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_family_offset(int var0, long var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pget_cache(int var0, int[] var1, long[] var2, long[] var3, double[] var4) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Pget_cache(int var0, int[] var1, int[] var2, int[] var3, double[] var4) throws HDF5LibraryException, NullPointerException {
+ long[] var5 = new long[]{(long)var2[0]};
+ long[] var6 = new long[]{(long)var3[0]};
+ int var7 = H5Pget_cache(var0, var1, var5, var6, var4);
+ var2[0] = (int)var5[0];
+ var3[0] = (int)var6[0];
+ return var7;
+ }
+
+ public static synchronized native int H5Pset_cache(int var0, int var1, long var2, long var4, double var6) throws HDF5LibraryException;
+
+ public static synchronized native H5AC_cache_config_t H5Pget_mdc_config(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Pset_mdc_config(int var0, H5AC_cache_config_t var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_gc_references(int var0, boolean[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Pget_gcreferences(int var0) throws HDF5LibraryException;
+
+ public static synchronized int H5Pget_gc_reference(int var0, boolean[] var1) throws HDF5LibraryException, NullPointerException {
+ return H5Pget_gc_references(var0, var1);
+ }
+
+ public static synchronized native int H5Pset_gc_references(int var0, boolean var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_fclose_degree(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_fclose_degree(int var0, int var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native long H5Pget_meta_block_size(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Pset_meta_block_size(int var0, long var1) throws HDF5LibraryException;
+
+ public static synchronized native long H5Pget_sieve_buf_size(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Pset_sieve_buf_size(int var0, long var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_small_data_block_size(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native long H5Pget_small_data_block_size_long(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_small_data_block_size(int var0, long var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_libver_bounds(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_libver_bounds(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pget_elink_file_cache_size(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Pset_elink_file_cache_size(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_layout(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_layout(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_chunk(int var0, int var1, long[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native int H5Pset_chunk(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized int H5Pset_chunk(int var0, int var1, long[] var2) throws HDF5Exception, NullPointerException, IllegalArgumentException {
+ if (var2 == null) {
+ return -1;
+ } else {
+ HDFArray var3 = new HDFArray(var2);
+ byte[] var4 = var3.byteify();
+ int var5 = H5Pset_chunk(var0, var1, var4);
+ Object var6 = null;
+ var3 = null;
+ return var5;
+ }
+ }
+
+ public static synchronized native int H5Pget_external(int var0, int var1, long var2, String[] var4, long[] var5) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native int H5Pset_external(int var0, String var1, long var2, long var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pget_external_count(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_szip(int var0, int var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_shuffle(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_nbit(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_scaleoffset(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pget_fill_value(int var0, int var1, byte[] var2) throws HDF5Exception;
+
+ public static synchronized int H5Pget_fill_value(int var0, int var1, Object var2) throws HDF5Exception {
+ HDFArray var3 = new HDFArray(var2);
+ byte[] var4 = var3.emptyBytes();
+ int var5 = H5Pget_fill_value(var0, var1, var4);
+ if (var5 >= 0) {
+ var3.arrayify(var4);
+ }
+
+ return var5;
+ }
+
+ public static synchronized native int H5Pset_fill_value(int var0, int var1, byte[] var2) throws HDF5Exception;
+
+ public static synchronized int H5Pset_fill_value(int var0, int var1, Object var2) throws HDF5Exception {
+ HDFArray var3 = new HDFArray(var2);
+ byte[] var4 = var3.byteify();
+ int var5 = H5Pset_fill_value(var0, var1, var4);
+ Object var6 = null;
+ var3 = null;
+ return var5;
+ }
+
+ public static synchronized native int H5Pfill_value_defined(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pget_alloc_time(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_alloc_time(int var0, int var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pget_fill_time(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_fill_time(int var0, int var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Pget_chunk_cache(int var0, long[] var1, long[] var2, double[] var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Pset_chunk_cache(int var0, long var1, long var3, double var5) throws HDF5LibraryException;
+
+ public static synchronized native long H5Pget_data_transform(int var0, String[] var1, long var2) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pset_data_transform(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pget_buffer(int var0, byte[] var1, byte[] var2) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native long H5Pget_buffer_size(int var0) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native void H5Pset_buffer_size(int var0, long var1) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pget_edc_check(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_edc_check(int var0, int var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pget_btree_ratios(int var0, double[] var1, double[] var2, double[] var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_btree_ratios(int var0, double var1, double var3, double var5) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_hyper_vector_size(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_hyper_vector_size(int var0, long var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Pget_create_intermediate_group(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_create_intermediate_group(int var0, boolean var1) throws HDF5LibraryException;
+
+ public static synchronized native long H5Pget_local_heap_size_hint(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_local_heap_size_hint(int var0, long var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_link_phase_change(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_link_phase_change(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pget_est_link_info(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_est_link_info(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pget_link_creation_order(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_link_creation_order(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_char_encoding(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Pset_char_encoding(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native long H5Pget_nlinks(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_nlinks(int var0, long var1) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native long H5Pget_elink_prefix(int var0, String[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_elink_prefix(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Pget_elink_fapl(int var0) throws HDF5LibraryException {
+ int var1 = _H5Pget_elink_fapl(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Pget_elink_fapl add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Pget_elink_fapl(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_elink_fapl(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_elink_acc_flags(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_elink_acc_flags(int var0, int var1) throws HDF5LibraryException, IllegalArgumentException;
+
+ public static synchronized native int H5Pget_copy_object(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Pset_copy_object(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_version(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native void H5Pget_fapl_core(int var0, long[] var1, boolean[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_fapl_core(int var0, long var1, boolean var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pget_fapl_direct(int var0, long[] var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pset_fapl_direct(int var0, long var1, long var3, long var5) throws HDF5LibraryException;
+
+ public static synchronized native int H5Pget_fapl_family(int var0, long[] var1, int[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_fapl_family(int var0, long var1, int var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Pget_fapl_multi(int var0, int[] var1, int[] var2, String[] var3, long[] var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Pset_fapl_multi(int var0, int[] var1, int[] var2, String[] var3, long[] var4, boolean var5) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Pget_preserve(int var0) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Pset_preserve(int var0, boolean var1) throws HDF5LibraryException, IllegalArgumentException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Pset_fapl_log(int var0, String var1, int var2, int var3) throws HDF5LibraryException, NullPointerException {
+ H5Pset_fapl_log(var0, var1, (long)var2, (long)var3);
+ return 1;
+ }
+
+ public static synchronized native void H5Pset_fapl_log(int var0, String var1, long var2, long var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_fapl_sec2(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Pset_fapl_split(int var0, String var1, int var2, String var3, int var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_fapl_stdio(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Pset_fapl_windows(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5PLset_loading_state(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5PLget_loading_state() throws HDF5LibraryException;
+
+ private static synchronized native int H5Rcreate(byte[] var0, int var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized byte[] H5Rcreate(int var0, String var1, int var2, int var3) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ byte var4 = 8;
+ if (var2 == HDF5Constants.H5R_DATASET_REGION) {
+ var4 = 12;
+ }
+
+ byte[] var5 = new byte[var4];
+ H5Rcreate(var5, var0, var1, var2, var3);
+ return var5;
+ }
+
+ public static int H5Rdereference(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ int var3 = _H5Rdereference(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Rdereference add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Rdereference(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native long H5Rget_name(int var0, int var1, byte[] var2, String[] var3, long var4) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Rget_obj_type(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static int H5Rget_obj_type(int var0, int var1, byte[] var2, int[] var3) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ return H5Rget_obj_type2(var0, var1, var2, var3);
+ }
+
+ private static synchronized native int H5Rget_obj_type2(int var0, int var1, byte[] var2, int[] var3) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static int H5Rget_region(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ int var3 = _H5Rget_region(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Rget_region add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Rget_region(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static int H5Sclose(int var0) throws HDF5LibraryException {
+ if (var0 < 0) {
+ return 0;
+ } else {
+ log.trace("OPEN_IDS: H5Sclose remove {}", var0);
+ OPEN_IDS.remove(var0);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Sclose(var0);
+ }
+ }
+
+ private static synchronized native int _H5Sclose(int var0) throws HDF5LibraryException;
+
+ public static int H5Scopy(int var0) throws HDF5LibraryException {
+ int var1 = _H5Scopy(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Scopy add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Scopy(int var0) throws HDF5LibraryException;
+
+ public static int H5Screate(int var0) throws HDF5LibraryException {
+ int var1 = _H5Screate(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Screate add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Screate(int var0) throws HDF5LibraryException;
+
+ public static int H5Screate_simple(int var0, long[] var1, long[] var2) throws HDF5Exception, NullPointerException {
+ int var3 = _H5Screate_simple(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Screate_simple add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Screate_simple(int var0, long[] var1, long[] var2) throws HDF5Exception, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Screate_simple(int var0, byte[] var1, byte[] var2) throws HDF5Exception, NullPointerException {
+ ByteBuffer var3 = ByteBuffer.wrap(var1);
+ long[] var4 = var3.asLongBuffer().array();
+ ByteBuffer var5 = ByteBuffer.wrap(var2);
+ long[] var6 = var5.asLongBuffer().array();
+ int var7 = _H5Screate_simple(var0, var4, var6);
+ if (var7 > 0) {
+ log.trace("OPEN_IDS: H5S add {}", var7);
+ OPEN_IDS.add(var7);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var7;
+ }
+
+ public static synchronized native int H5Sdecode(byte[] var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native byte[] H5Sencode(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Sextent_copy(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native boolean H5Sextent_equal(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Sget_select_bounds(int var0, long[] var1, long[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native long H5Sget_select_elem_npoints(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Sget_select_elem_pointlist(int var0, long var1, long var3, long[] var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Sget_select_hyper_blocklist(int var0, long var1, long var3, long[] var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native long H5Sget_select_hyper_nblocks(int var0) throws HDF5LibraryException;
+
+ public static synchronized native long H5Sget_select_npoints(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Sget_select_type(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Sget_simple_extent_dims(int var0, long[] var1, long[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Sget_simple_extent_ndims(int var0) throws HDF5LibraryException;
+
+ public static synchronized native long H5Sget_simple_extent_npoints(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Sget_simple_extent_type(int var0) throws HDF5LibraryException;
+
+ public static synchronized native boolean H5Sis_simple(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Soffset_simple(int var0, byte[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Soffset_simple(int var0, long[] var1) throws HDF5Exception, NullPointerException {
+ if (var1 == null) {
+ return -1;
+ } else {
+ HDFArray var2 = new HDFArray(var1);
+ byte[] var3 = var2.byteify();
+ int var4 = H5Soffset_simple(var0, var3);
+ Object var5 = null;
+ var2 = null;
+ return var4;
+ }
+ }
+
+ public static synchronized native int H5Sselect_all(int var0) throws HDF5LibraryException;
+
+ private static synchronized native int H5Sselect_elements(int var0, int var1, int var2, byte[] var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Sselect_elements(int var0, int var1, int var2, long[][] var3) throws HDF5Exception, HDF5LibraryException, NullPointerException {
+ if (var3 == null) {
+ return -1;
+ } else {
+ HDFArray var4 = new HDFArray(var3);
+ byte[] var5 = var4.byteify();
+ int var6 = H5Sselect_elements(var0, var1, var2, var5);
+ Object var7 = null;
+ var4 = null;
+ return var6;
+ }
+ }
+
+ public static synchronized int H5Sselect_hyperslab(int var0, int var1, byte[] var2, byte[] var3, byte[] var4, byte[] var5) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ ByteBuffer var6 = ByteBuffer.wrap(var2);
+ long[] var7 = var6.asLongBuffer().array();
+ ByteBuffer var8 = ByteBuffer.wrap(var3);
+ long[] var9 = var8.asLongBuffer().array();
+ ByteBuffer var10 = ByteBuffer.wrap(var4);
+ long[] var11 = var10.asLongBuffer().array();
+ ByteBuffer var12 = ByteBuffer.wrap(var5);
+ long[] var13 = var12.asLongBuffer().array();
+ return H5Sselect_hyperslab(var0, var1, var7, var9, var11, var13);
+ }
+
+ public static synchronized native int H5Sselect_hyperslab(int var0, int var1, long[] var2, long[] var3, long[] var4, long[] var5) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native int H5Sselect_none(int var0) throws HDF5LibraryException;
+
+ public static synchronized native boolean H5Sselect_valid(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Sset_extent_none(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Sset_extent_simple(int var0, int var1, long[] var2, long[] var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Sset_extent_simple(int var0, int var1, byte[] var2, byte[] var3) throws HDF5LibraryException, NullPointerException {
+ ByteBuffer var4 = ByteBuffer.wrap(var2);
+ long[] var5 = var4.asLongBuffer().array();
+ ByteBuffer var6 = ByteBuffer.wrap(var3);
+ long[] var7 = var6.asLongBuffer().array();
+ return H5Sset_extent_simple(var0, var1, var5, var7);
+ }
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Tarray_create(int var0, int var1, int[] var2, int[] var3) throws HDF5LibraryException, NullPointerException {
+ int var4 = _H5Tarray_create(var0, var1, var2, var3);
+ if (var4 > 0) {
+ log.trace("OPEN_IDS: H5T add {}", var4);
+ OPEN_IDS.add(var4);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var4;
+ }
+
+ private static synchronized native int _H5Tarray_create(int var0, int var1, int[] var2, int[] var3) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Tarray_create(int var0, int var1, long[] var2) throws HDF5LibraryException, NullPointerException {
+ int var3 = _H5Tarray_create2(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Tarray_create add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Tarray_create2(int var0, int var1, long[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Tclose(int var0) throws HDF5LibraryException {
+ if (var0 < 0) {
+ return 0;
+ } else {
+ log.trace("OPEN_IDS: H5Tclose remove {}", var0);
+ OPEN_IDS.remove(var0);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Tclose(var0);
+ }
+ }
+
+ private static synchronized native int _H5Tclose(int var0) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Tcommit(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
+ return H5Tcommit1(var0, var1, var2);
+ }
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Tcommit1(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Tcommit(int var0, String var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Tcommit_anon(int var0, int var1, int var2, int var3) throws HDF5LibraryException;
+
+ public static synchronized native boolean H5Tcommitted(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Tcompiler_conv(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native void H5Tconvert(int var0, int var1, long var2, byte[] var4, byte[] var5, int var6) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Tcopy(int var0) throws HDF5LibraryException {
+ int var1 = _H5Tcopy(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Tcopy add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Tcopy(int var0) throws HDF5LibraryException;
+
+ public static int H5Tcreate(int var0, int var1) throws HDF5LibraryException {
+ return H5Tcreate(var0, (long)var1);
+ }
+
+ public static int H5Tcreate(int var0, long var1) throws HDF5LibraryException {
+ int var3 = _H5Tcreate(var0, var1);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Tcreate add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Tcreate(int var0, long var1) throws HDF5LibraryException;
+
+ public static int H5Tdecode(byte[] var0) throws HDF5LibraryException, NullPointerException {
+ int var1 = _H5Tdecode(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Tdecode add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Tdecode(byte[] var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Tdetect_class(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tencode(int var0, byte[] var1, long var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Tenum_create(int var0) throws HDF5LibraryException {
+ int var1 = _H5Tenum_create(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Tenum_create add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Tenum_create(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Tenum_insert(int var0, String var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Tenum_insert(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException {
+ return H5Tenum_insert_int(var0, var1, var2);
+ }
+
+ public static int H5Tenum_insert(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
+ int[] var3 = new int[]{var2};
+ return H5Tenum_insert_int(var0, var1, var3);
+ }
+
+ private static synchronized native int H5Tenum_insert_int(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native String H5Tenum_nameof(int var0, byte[] var1, long var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Tenum_nameof(int var0, int[] var1, String[] var2, int var3) throws HDF5LibraryException, NullPointerException {
+ return H5Tenum_nameof_int(var0, var1, var2, var3);
+ }
+
+ private static synchronized native int H5Tenum_nameof_int(int var0, int[] var1, String[] var2, int var3) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native void H5Tenum_valueof(int var0, String var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Tenum_valueof(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException {
+ return H5Tenum_valueof_int(var0, var1, var2);
+ }
+
+ private static synchronized native int H5Tenum_valueof_int(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Tequal(int var0, int var1) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static synchronized native int H5Tget_array_dims(int var0, int[] var1, int[] var2) throws HDF5LibraryException, NullPointerException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Tget_array_dims(int var0, long[] var1, int[] var2) throws HDF5LibraryException, NullPointerException {
+ return H5Tget_array_dims1(var0, var1, var2);
+ }
+
+ /** @deprecated */
+ @Deprecated
+ private static synchronized native int H5Tget_array_dims1(int var0, long[] var1, int[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Tget_array_dims(int var0, long[] var1) throws HDF5LibraryException, NullPointerException {
+ return H5Tget_array_dims2(var0, var1);
+ }
+
+ public static synchronized native int H5Tget_array_dims2(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Tget_array_ndims(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_class(int var0) throws HDF5LibraryException;
+
+ public static String H5Tget_class_name(int var0) {
+ String var1 = null;
+ if (HDF5Constants.H5T_INTEGER == var0) {
+ var1 = "H5T_INTEGER";
+ } else if (HDF5Constants.H5T_FLOAT == var0) {
+ var1 = "H5T_FLOAT";
+ } else if (HDF5Constants.H5T_TIME == var0) {
+ var1 = "H5T_TIME";
+ } else if (HDF5Constants.H5T_STRING == var0) {
+ var1 = "H5T_STRING";
+ } else if (HDF5Constants.H5T_BITFIELD == var0) {
+ var1 = "H5T_BITFIELD";
+ } else if (HDF5Constants.H5T_OPAQUE == var0) {
+ var1 = "H5T_OPAQUE";
+ } else if (HDF5Constants.H5T_COMPOUND == var0) {
+ var1 = "H5T_COMPOUND";
+ } else if (HDF5Constants.H5T_REFERENCE == var0) {
+ var1 = "H5T_REFERENCE";
+ } else if (HDF5Constants.H5T_ENUM == var0) {
+ var1 = "H5T_ENUM";
+ } else if (HDF5Constants.H5T_VLEN == var0) {
+ var1 = "H5T_VLEN";
+ } else if (HDF5Constants.H5T_ARRAY == var0) {
+ var1 = "H5T_ARRAY";
+ } else {
+ var1 = "H5T_NO_CLASS";
+ }
+
+ return var1;
+ }
+
+ public static int H5Tget_create_plist(int var0) throws HDF5LibraryException {
+ int var1 = _H5Tget_create_plist(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: _H5Tget_create_plist add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Tget_create_plist(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_cset(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tset_cset(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_ebias(int var0) throws HDF5LibraryException;
+
+ public static int H5Tset_ebias(int var0, int var1) throws HDF5LibraryException {
+ H5Tset_ebias(var0, (long)var1);
+ return 0;
+ }
+
+ public static synchronized native long H5Tget_ebias_long(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Tset_ebias(int var0, long var1) throws HDF5LibraryException;
+
+ public static synchronized native void H5Tget_fields(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static int H5Tget_fields(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
+ return H5Tget_fields_int(var0, var1);
+ }
+
+ private static synchronized native int H5Tget_fields_int(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ public static synchronized native void H5Tset_fields(int var0, long var1, long var3, long var5, long var7, long var9) throws HDF5LibraryException;
+
+ public static int H5Tset_fields(int var0, int var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException {
+ H5Tset_fields(var0, (long)var1, (long)var2, (long)var3, (long)var4, (long)var5);
+ return 0;
+ }
+
+ public static synchronized native int H5Tget_inpad(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tset_inpad(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_member_class(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_member_index(int var0, String var1);
+
+ public static synchronized native String H5Tget_member_name(int var0, int var1);
+
+ public static synchronized native long H5Tget_member_offset(int var0, int var1) throws HDF5LibraryException;
+
+ public static int H5Tget_member_type(int var0, int var1) throws HDF5LibraryException {
+ int var2 = _H5Tget_member_type(var0, var1);
+ if (var2 > 0) {
+ log.trace("OPEN_IDS: H5Tget_member_type add {}", var2);
+ OPEN_IDS.add(var2);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var2;
+ }
+
+ private static synchronized native int _H5Tget_member_type(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native void H5Tget_member_value(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Tget_member_value(int var0, int var1, int[] var2) throws HDF5LibraryException, NullPointerException {
+ return H5Tget_member_value_int(var0, var1, var2);
+ }
+
+ private static synchronized native int H5Tget_member_value_int(int var0, int var1, int[] var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized int H5Tget_native_type(int var0) throws HDF5LibraryException {
+ return H5Tget_native_type(var0, HDF5Constants.H5T_DIR_ASCEND);
+ }
+
+ public static int H5Tget_native_type(int var0, int var1) throws HDF5LibraryException {
+ int var2 = _H5Tget_native_type(var0, var1);
+ if (var2 > 0) {
+ log.trace("OPEN_IDS: H5Tget_native_type add {}", var2);
+ OPEN_IDS.add(var2);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var2;
+ }
+
+ private static synchronized native int _H5Tget_native_type(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_nmembers(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_norm(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tset_norm(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_offset(int var0) throws HDF5LibraryException;
+
+ public static int H5Tset_offset(int var0, int var1) throws HDF5LibraryException {
+ H5Tset_offset(var0, (long)var1);
+ return 0;
+ }
+
+ public static synchronized native void H5Tset_offset(int var0, long var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_order(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tset_order(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_pad(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Tset_pad(int var0, int var1, int var2) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_precision(int var0) throws HDF5LibraryException;
+
+ public static int H5Tset_precision(int var0, int var1) throws HDF5LibraryException {
+ H5Tset_precision(var0, (long)var1);
+ return 0;
+ }
+
+ public static synchronized native long H5Tget_precision_long(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Tset_precision(int var0, long var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_sign(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tset_sign(int var0, int var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_size(int var0) throws HDF5LibraryException;
+
+ public static int H5Tset_size(int var0, int var1) throws HDF5LibraryException {
+ H5Tset_size(var0, (long)var1);
+ return 0;
+ }
+
+ public static synchronized native long H5Tget_size_long(int var0) throws HDF5LibraryException;
+
+ public static synchronized native void H5Tset_size(int var0, long var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tget_strpad(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tset_strpad(int var0, int var1) throws HDF5LibraryException;
+
+ public static int H5Tget_super(int var0) throws HDF5LibraryException {
+ int var1 = _H5Tget_super(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Tget_super add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Tget_super(int var0) throws HDF5LibraryException;
+
+ public static synchronized native String H5Tget_tag(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tset_tag(int var0, String var1) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tinsert(int var0, String var1, long var2, int var4) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native boolean H5Tis_variable_str(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Tlock(int var0) throws HDF5LibraryException;
+
+ /** @deprecated */
+ @Deprecated
+ public static int H5Topen(int var0, String var1) throws HDF5LibraryException, NullPointerException {
+ int var2 = _H5Topen(var0, var1);
+ if (var2 > 0) {
+ log.trace("OPEN_IDS: H5Topen add {}", var2);
+ OPEN_IDS.add(var2);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var2;
+ }
+
+ private static synchronized native int _H5Topen(int var0, String var1) throws HDF5LibraryException, NullPointerException;
+
+ public static int H5Topen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
+ int var3 = _H5Topen2(var0, var1, var2);
+ if (var3 > 0) {
+ log.trace("OPEN_IDS: H5Topen add {}", var3);
+ OPEN_IDS.add(var3);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var3;
+ }
+
+ private static synchronized native int _H5Topen2(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Tpack(int var0) throws HDF5LibraryException;
+
+ public static int H5Tvlen_create(int var0) throws HDF5LibraryException {
+ int var1 = _H5Tvlen_create(var0);
+ if (var1 > 0) {
+ log.trace("OPEN_IDS: H5Tvlen_create add {}", var1);
+ OPEN_IDS.add(var1);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+
+ return var1;
+ }
+
+ private static synchronized native int _H5Tvlen_create(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Zfilter_avail(int var0) throws HDF5LibraryException, NullPointerException;
+
+ public static synchronized native int H5Zget_filter_info(int var0) throws HDF5LibraryException;
+
+ public static synchronized native int H5Zunregister(int var0) throws HDF5LibraryException, NullPointerException;
+
+ static {
+ loadH5Lib();
+ }
+}
--
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