package com.se.nsl.utils;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.HDF5GroupInfo;
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import hdf.hdf5lib.HDFArray;
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import hdf.hdf5lib.callbacks.H5A_iterate_cb;
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import hdf.hdf5lib.callbacks.H5A_iterate_t;
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import hdf.hdf5lib.callbacks.H5D_iterate_cb;
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import hdf.hdf5lib.callbacks.H5D_iterate_t;
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import hdf.hdf5lib.callbacks.H5E_walk_cb;
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import hdf.hdf5lib.callbacks.H5E_walk_t;
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import hdf.hdf5lib.callbacks.H5L_iterate_cb;
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import hdf.hdf5lib.callbacks.H5L_iterate_t;
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import hdf.hdf5lib.callbacks.H5O_iterate_cb;
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import hdf.hdf5lib.callbacks.H5O_iterate_t;
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import hdf.hdf5lib.callbacks.H5P_iterate_cb;
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import hdf.hdf5lib.callbacks.H5P_iterate_t;
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import hdf.hdf5lib.exceptions.HDF5Exception;
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import hdf.hdf5lib.exceptions.HDF5JavaException;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import hdf.hdf5lib.structs.H5AC_cache_config_t;
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import hdf.hdf5lib.structs.H5A_info_t;
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import hdf.hdf5lib.structs.H5F_info_t;
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import hdf.hdf5lib.structs.H5G_info_t;
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import hdf.hdf5lib.structs.H5L_info_t;
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import hdf.hdf5lib.structs.H5O_info_t;
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import java.io.File;
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import java.io.Serializable;
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import java.nio.ByteBuffer;
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import java.util.Collection;
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import java.util.LinkedHashSet;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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public class H5 implements Serializable {
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private static final long serialVersionUID = 6129888282117053288L;
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private static final Logger log = LoggerFactory.getLogger(H5.class);
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public static final int[] LIB_VERSION = new int[]{1, 8, 19};
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public static final String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib";
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public static final String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName";
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private static String s_libraryName;
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private static boolean isLibraryLoaded = false;
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private static final boolean IS_CRITICAL_PINNING = true;
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private static final LinkedHashSet<Integer> OPEN_IDS = new LinkedHashSet();
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public H5() {
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}
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public static void loadH5Lib() {
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if (!isLibraryLoaded) {
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// System.setProperty("hdf.hdf5lib.H5.loadLibraryName", "hdf5");
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s_libraryName = System.getProperty("hdf.hdf5lib.H5.loadLibraryName", (String)null);
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String var0 = null;
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if (s_libraryName != null && s_libraryName.length() > 0) {
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try {
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var0 = System.mapLibraryName(s_libraryName);
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System.loadLibrary(s_libraryName);
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isLibraryLoaded = true;
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} catch (Throwable var30) {
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var30.printStackTrace();
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isLibraryLoaded = false;
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} finally {
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log.info("HDF5 library: " + s_libraryName);
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log.debug(" resolved to: " + var0 + "; ");
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log.info((isLibraryLoaded ? "" : " NOT") + " successfully loaded from system property");
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}
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}
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if (!isLibraryLoaded) {
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String var1 = System.getProperty("hdf.hdf5lib.H5.hdf5lib", (String)null);
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if (var1 != null && var1.length() > 0) {
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File var2 = new File(var1);
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if (!var2.exists() || !var2.canRead() || !var2.isFile()) {
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isLibraryLoaded = false;
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throw new UnsatisfiedLinkError("Invalid HDF5 library, " + var1);
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}
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try {
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System.load(var1);
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isLibraryLoaded = true;
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} catch (Throwable var29) {
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var29.printStackTrace();
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isLibraryLoaded = false;
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} finally {
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log.info("HDF5 library: ");
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log.debug(var1);
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log.info((isLibraryLoaded ? "" : " NOT") + " successfully loaded.");
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}
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}
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}
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if (!isLibraryLoaded) {
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try {
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s_libraryName = "jhdf5";
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var0 = System.mapLibraryName(s_libraryName);
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System.loadLibrary("jhdf5");
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isLibraryLoaded = true;
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} catch (Throwable var28) {
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var28.printStackTrace();
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isLibraryLoaded = false;
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} finally {
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log.info("HDF5 library: " + s_libraryName);
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log.debug(" resolved to: " + var0 + "; ");
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log.info((isLibraryLoaded ? "" : " NOT") + " successfully loaded from java.library.path");
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}
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}
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try {
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H5dont_atexit();
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} catch (HDF5LibraryException var27) {
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System.exit(1);
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}
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if (!log.isDebugEnabled()) {
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H5error_off();
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}
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Integer var34 = Integer.getInteger("hdf.hdf5lib.H5.hdf5maj", (Integer)null);
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Integer var35 = Integer.getInteger("hdf.hdf5lib.H5.hdf5min", (Integer)null);
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Integer var3 = Integer.getInteger("hdf.hdf5lib.H5.hdf5rel", (Integer)null);
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if (var34 != null && var35 != null && var3 != null) {
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H5check_version(var34, var35, var3);
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}
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}
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}
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public static final int getOpenIDCount() {
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return OPEN_IDS.size();
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}
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/** @deprecated */
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@Deprecated
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public static final int getOpenID(int var0) {
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byte var1 = -1;
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return var1;
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}
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public static final Collection<Integer> getOpenIDs() {
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return OPEN_IDS;
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}
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public static synchronized native int H5check_version(int var0, int var1, int var2);
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public static synchronized native int H5close() throws HDF5LibraryException;
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public static synchronized native int H5open() throws HDF5LibraryException;
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private static synchronized native int H5dont_atexit() throws HDF5LibraryException;
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public static synchronized native int H5error_off();
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public static synchronized native int H5garbage_collect() throws HDF5LibraryException;
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public static synchronized native int H5get_libversion(int[] var0) throws HDF5LibraryException;
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public static synchronized native int H5set_free_list_limits(int var0, int var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException;
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public static synchronized native void H5export_dataset(String var0, String var1, String var2, int var3) throws HDF5LibraryException;
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private static synchronized native boolean H5is_library_threadsafe();
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public static int H5Aclose(int var0) throws HDF5LibraryException {
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if (var0 < 0) {
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return 0;
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} else {
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log.trace("OPEN_IDS: H5Aclose remove {}", var0);
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OPEN_IDS.remove(var0);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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return _H5Aclose(var0);
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}
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}
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private static synchronized native int _H5Aclose(int var0) throws HDF5LibraryException;
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public static synchronized native int H5Acopy(int var0, int var1) throws HDF5LibraryException;
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/** @deprecated */
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@Deprecated
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public static int H5Acreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException {
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int var5 = _H5Acreate(var0, var1, var2, var3, var4);
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if (var5 > 0) {
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log.trace("OPEN_IDS: H5A add {}", var5);
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OPEN_IDS.add(var5);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var5;
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}
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private static synchronized native int _H5Acreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
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public static int H5Acreate(int var0, String var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException, NullPointerException {
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int var6 = _H5Acreate2(var0, var1, var2, var3, var4, var5);
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if (var6 > 0) {
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log.trace("OPEN_IDS: H5A create add {}", var6);
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OPEN_IDS.add(var6);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var6;
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}
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private static synchronized native int _H5Acreate2(int var0, String var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
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public static int H5Acreate_by_name(int var0, String var1, String var2, int var3, int var4, int var5, int var6, int var7) throws HDF5LibraryException, NullPointerException {
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int var8 = _H5Acreate_by_name(var0, var1, var2, var3, var4, var5, var6, var7);
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if (var8 > 0) {
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log.trace("OPEN_IDS: H5Acreate_by_name add {}", var8);
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OPEN_IDS.add(var8);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var8;
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}
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private static synchronized native int _H5Acreate_by_name(int var0, String var1, String var2, int var3, int var4, int var5, int var6, int var7) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5Adelete(int var0, String var1) throws HDF5LibraryException, NullPointerException;
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public static synchronized native void H5Adelete_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5Adelete_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException;
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public static synchronized native boolean H5Aexists(int var0, String var1) throws HDF5LibraryException, NullPointerException;
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public static synchronized native boolean H5Aexists_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException;
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public static synchronized native H5A_info_t H5Aget_info(int var0) throws HDF5LibraryException;
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public static synchronized native H5A_info_t H5Aget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
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public static synchronized native H5A_info_t H5Aget_info_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException;
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public static synchronized native String H5Aget_name(int var0) throws HDF5LibraryException;
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public static synchronized native String H5Aget_name_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
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/** @deprecated */
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@Deprecated
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public static synchronized native int H5Aget_num_attrs(int var0) throws HDF5LibraryException;
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public static int H5Aget_space(int var0) throws HDF5LibraryException {
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int var1 = _H5Aget_space(var0);
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if (var1 > 0) {
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log.trace("OPEN_IDS: H5Aget_space add {}", var1);
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OPEN_IDS.add(var1);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var1;
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}
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private static synchronized native int _H5Aget_space(int var0) throws HDF5LibraryException;
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public static synchronized native long H5Aget_storage_size(int var0) throws HDF5LibraryException;
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public static int H5Aget_type(int var0) throws HDF5LibraryException {
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int var1 = _H5Aget_type(var0);
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if (var1 > 0) {
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log.trace("OPEN_IDS: H5Aget_type add {}", var1);
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OPEN_IDS.add(var1);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var1;
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}
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private static synchronized native int _H5Aget_type(int var0) throws HDF5LibraryException;
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public static int H5Aopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
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int var3 = _H5Aopen(var0, var1, var2);
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if (var3 > 0) {
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log.trace("OPEN_IDS: H5Aopen add {}", var3);
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OPEN_IDS.add(var3);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var3;
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}
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private static synchronized native int _H5Aopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
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public static int H5Aopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6, int var7) throws HDF5LibraryException, NullPointerException {
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int var8 = _H5Aopen_by_idx(var0, var1, var2, var3, var4, var6, var7);
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if (var8 > 0) {
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log.trace("OPEN_IDS: H5Aopen_by_idx add {}", var8);
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OPEN_IDS.add(var8);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var8;
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}
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private static synchronized native int _H5Aopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6, int var7) throws HDF5LibraryException, NullPointerException;
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public static int H5Aopen_by_name(int var0, String var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException {
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int var5 = _H5Aopen_by_name(var0, var1, var2, var3, var4);
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if (var5 > 0) {
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log.trace("OPEN_IDS: H5Aopen_by_name add {}", var5);
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OPEN_IDS.add(var5);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var5;
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}
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private static synchronized native int _H5Aopen_by_name(int var0, String var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
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/** @deprecated */
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@Deprecated
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public static int H5Aopen_idx(int var0, int var1) throws HDF5LibraryException {
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int var2 = _H5Aopen_idx(var0, var1);
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if (var2 > 0) {
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log.trace("OPEN_IDS: H5A add {}", var2);
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OPEN_IDS.add(var2);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var2;
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}
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private static synchronized native int _H5Aopen_idx(int var0, int var1) throws HDF5LibraryException;
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/** @deprecated */
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@Deprecated
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public static int H5Aopen_name(int var0, String var1) throws HDF5LibraryException, NullPointerException {
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int var2 = _H5Aopen_name(var0, var1);
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if (var2 > 0) {
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log.trace("OPEN_IDS: H5A add {}", var2);
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OPEN_IDS.add(var2);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var2;
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}
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private static synchronized native int _H5Aopen_name(int var0, String var1) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5Aread(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
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public static synchronized int H5Aread(int var0, int var1, Object var2) throws HDF5Exception, NullPointerException {
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HDFArray var3 = new HDFArray(var2);
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byte[] var4 = var3.emptyBytes();
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int var5 = H5Aread(var0, var1, var4);
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if (var5 >= 0) {
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var3.arrayify(var4);
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}
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return var5;
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}
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public static synchronized native int H5AreadVL(int var0, int var1, String[] var2) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5AreadComplex(int var0, int var1, String[] var2) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5Arename(int var0, String var1, String var2) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5Arename_by_name(int var0, String var1, String var2, String var3, int var4) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5Awrite(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
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public static synchronized int H5Awrite(int var0, int var1, Object var2) throws HDF5Exception, NullPointerException {
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HDFArray var3 = new HDFArray(var2);
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byte[] var4 = var3.byteify();
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int var5 = H5Awrite(var0, var1, var4);
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Object var6 = null;
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var3 = null;
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return var5;
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}
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public static synchronized native int H5AwriteVL(int var0, int var1, String[] var2) throws HDF5LibraryException, NullPointerException;
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public static int H5Aget_create_plist(int var0) throws HDF5LibraryException {
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int var1 = _H5Aget_create_plist(var0);
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if (var1 > 0) {
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log.trace("OPEN_IDS: H5Aget_create_plist add {}", var1);
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OPEN_IDS.add(var1);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var1;
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}
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private static synchronized native int _H5Aget_create_plist(int var0) throws HDF5LibraryException;
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public static synchronized native int H5Aiterate(int var0, int var1, int var2, long var3, H5A_iterate_cb var5, H5A_iterate_t var6) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5Aiterate_by_name(int var0, String var1, int var2, int var3, long var4, H5A_iterate_cb var6, H5A_iterate_t var7, int var8) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5Dcopy(int var0, int var1) throws HDF5LibraryException;
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public static int H5Dclose(int var0) throws HDF5LibraryException {
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if (var0 < 0) {
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return 0;
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} else {
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log.trace("OPEN_IDS: H5Dclose remove {}", var0);
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OPEN_IDS.remove(var0);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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return _H5Dclose(var0);
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}
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}
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private static synchronized native int _H5Dclose(int var0) throws HDF5LibraryException;
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/** @deprecated */
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@Deprecated
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public static int H5Dcreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException {
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int var5 = _H5Dcreate(var0, var1, var2, var3, var4);
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if (var5 > 0) {
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log.trace("OPEN_IDS: H5D add {}", var5);
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OPEN_IDS.add(var5);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var5;
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}
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private static synchronized native int _H5Dcreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
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public static int H5Dcreate(int var0, String var1, int var2, int var3, int var4, int var5, int var6) throws HDF5LibraryException, NullPointerException {
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int var7 = _H5Dcreate2(var0, var1, var2, var3, var4, var5, var6);
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if (var7 > 0) {
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log.trace("OPEN_IDS: H5Dcreate add {}", var7);
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OPEN_IDS.add(var7);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var7;
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}
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private static synchronized native int _H5Dcreate2(int var0, String var1, int var2, int var3, int var4, int var5, int var6) throws HDF5LibraryException, NullPointerException;
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public static int H5Dcreate_anon(int var0, int var1, int var2, int var3, int var4) throws HDF5LibraryException {
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int var5 = _H5Dcreate_anon(var0, var1, var2, var3, var4);
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if (var5 > 0) {
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log.trace("OPEN_IDS: H5Dcreate_anon add {}", var5);
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OPEN_IDS.add(var5);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var5;
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}
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private static synchronized native int _H5Dcreate_anon(int var0, int var1, int var2, int var3, int var4) throws HDF5LibraryException;
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/** @deprecated */
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@Deprecated
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public static synchronized native int H5Dextend(int var0, byte[] var1) throws HDF5LibraryException, NullPointerException;
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/** @deprecated */
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@Deprecated
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public static synchronized int H5Dextend(int var0, long[] var1) throws HDF5Exception, NullPointerException {
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boolean var2 = true;
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HDFArray var3 = new HDFArray(var1);
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byte[] var4 = var3.byteify();
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int var5 = H5Dextend(var0, var4);
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Object var6 = null;
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var3 = null;
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return var5;
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}
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public static synchronized native void H5Dfill(byte[] var0, int var1, byte[] var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
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public static synchronized native int H5Dget_access_plist(int var0) throws HDF5LibraryException;
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public static int H5Dget_create_plist(int var0) throws HDF5LibraryException {
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int var1 = _H5Dget_create_plist(var0);
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if (var1 > 0) {
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log.trace("OPEN_IDS: H5Dget_create_plist add {}", var1);
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OPEN_IDS.add(var1);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var1;
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}
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private static synchronized native int _H5Dget_create_plist(int var0) throws HDF5LibraryException;
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public static synchronized native long H5Dget_offset(int var0) throws HDF5LibraryException;
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public static int H5Dget_space(int var0) throws HDF5LibraryException {
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int var1 = _H5Dget_space(var0);
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if (var1 > 0) {
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log.trace("OPEN_IDS: H5Dget_space add {}", var1);
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OPEN_IDS.add(var1);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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return var1;
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}
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private static synchronized native int _H5Dget_space(int var0) throws HDF5LibraryException;
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public static synchronized native int H5Dget_space_status(int var0) throws HDF5LibraryException;
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public static int H5Dget_space_status(int var0, int[] var1) throws HDF5LibraryException, NullPointerException {
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return _H5Dget_space_status(var0, var1);
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}
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private static synchronized native int _H5Dget_space_status(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
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public static synchronized native long H5Dget_storage_size(int var0) throws HDF5LibraryException, IllegalArgumentException;
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public static int H5Dget_type(int var0) throws HDF5LibraryException {
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int var1 = _H5Dget_type(var0);
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if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Dget_type add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Dget_type(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Diterate(byte[] var0, int var1, int var2, H5D_iterate_cb var3, H5D_iterate_t var4) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static int H5Dopen(int var0, String var1) throws HDF5LibraryException, NullPointerException {
|
int var2 = _H5Dopen(var0, var1);
|
if (var2 > 0) {
|
log.trace("OPEN_IDS: H5D add {}", var2);
|
OPEN_IDS.add(var2);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var2;
|
}
|
|
private static synchronized native int _H5Dopen(int var0, String var1) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Dopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
|
int var3 = _H5Dopen2(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Dopen add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Dopen2(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Dread(int var0, int var1, int var2, int var3, int var4, byte[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dread(int var0, int var1, int var2, int var3, int var4, byte[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dread(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized int H5Dread(int var0, int var1, int var2, int var3, int var4, Object var5) throws HDF5Exception, HDF5LibraryException, NullPointerException {
|
return H5Dread(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized int H5Dread(int var0, int var1, int var2, int var3, int var4, Object var5, boolean var6) throws HDF5Exception, HDF5LibraryException, NullPointerException {
|
boolean var7 = true;
|
boolean var8 = false;
|
Class var9 = var5.getClass();
|
if (!var9.isArray()) {
|
throw new HDF5JavaException("H5Dread: data is not an array");
|
} else {
|
String var10 = var9.getName();
|
var8 = var10.lastIndexOf(91) == var10.indexOf(91);
|
char var11 = var10.charAt(var10.lastIndexOf("[") + 1);
|
log.trace("H5Dread: cname={} is1D={} dname={}", new Object[]{var10, var8, var11});
|
int var14;
|
if (var8 && var11 == 'B') {
|
log.trace("H5Dread_dname_B");
|
var14 = H5Dread(var0, var1, var2, var3, var4, (byte[])((byte[])var5), var6);
|
} else if (var8 && var11 == 'S') {
|
log.trace("H5Dread_dname_S");
|
var14 = H5Dread_short(var0, var1, var2, var3, var4, (short[])((short[])var5), var6);
|
} else if (var8 && var11 == 'I') {
|
log.trace("H5Dread_dname_I");
|
var14 = H5Dread_int(var0, var1, var2, var3, var4, (int[])((int[])var5), var6);
|
} else if (var8 && var11 == 'J') {
|
log.trace("H5Dread_dname_J");
|
var14 = H5Dread_long(var0, var1, var2, var3, var4, (long[])((long[])var5));
|
} else if (var8 && var11 == 'F') {
|
log.trace("H5Dread_dname_F");
|
var14 = H5Dread_float(var0, var1, var2, var3, var4, (float[])((float[])var5), var6);
|
} else if (var8 && var11 == 'D') {
|
log.trace("H5Dread_dname_D");
|
var14 = H5Dread_double(var0, var1, var2, var3, var4, (double[])((double[])var5), var6);
|
} else if (H5Tequal(var1, HDF5Constants.H5T_STD_REF_DSETREG)) {
|
log.trace("H5Dread_reg_ref");
|
var14 = H5Dread_reg_ref(var0, var1, var2, var3, var4, (String[])((String[])var5));
|
} else if (var8 && var9.getComponentType() == String.class) {
|
log.trace("H5Dread_string type");
|
if (H5Tis_variable_str(var1)) {
|
var14 = H5DreadVL(var0, var1, var2, var3, var4, (Object[])((Object[])var5));
|
} else {
|
var14 = H5Dread_string(var0, var1, var2, var3, var4, (String[])((String[])var5));
|
}
|
} else {
|
HDFArray var12 = new HDFArray(var5);
|
byte[] var13 = var12.emptyBytes();
|
log.trace("H5Dread_else");
|
var14 = H5Dread(var0, var1, var2, var3, var4, var13, var6);
|
if (var14 >= 0) {
|
var12.arrayify(var13);
|
}
|
|
Object var15 = null;
|
var12 = null;
|
}
|
|
return var14;
|
}
|
}
|
|
public static synchronized native int H5Dread_double(int var0, int var1, int var2, int var3, int var4, double[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dread_double(int var0, int var1, int var2, int var3, int var4, double[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dread_double(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5Dread_float(int var0, int var1, int var2, int var3, int var4, float[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dread_float(int var0, int var1, int var2, int var3, int var4, float[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dread_float(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5Dread_int(int var0, int var1, int var2, int var3, int var4, int[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dread_int(int var0, int var1, int var2, int var3, int var4, int[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dread_int(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5Dread_long(int var0, int var1, int var2, int var3, int var4, long[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dread_long(int var0, int var1, int var2, int var3, int var4, long[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dread_long(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5Dread_reg_ref(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Dread_reg_ref_data(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Dread_short(int var0, int var1, int var2, int var3, int var4, short[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dread_short(int var0, int var1, int var2, int var3, int var4, short[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dread_short(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5Dread_string(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5DreadVL(int var0, int var1, int var2, int var3, int var4, Object[] var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Dset_extent(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Dvlen_get_buf_size(int var0, int var1, int var2, int[] var3) throws HDF5LibraryException;
|
|
public static synchronized native long H5Dvlen_get_buf_size_long(int var0, int var1, int var2) throws HDF5LibraryException;
|
|
public static synchronized native int H5Dvlen_reclaim(int var0, int var1, int var2, byte[] var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Dwrite(int var0, int var1, int var2, int var3, int var4, byte[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dwrite(int var0, int var1, int var2, int var3, int var4, byte[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dwrite(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized int H5Dwrite(int var0, int var1, int var2, int var3, int var4, Object var5) throws HDF5Exception, HDF5LibraryException, NullPointerException {
|
return H5Dwrite(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized int H5Dwrite(int var0, int var1, int var2, int var3, int var4, Object var5, boolean var6) throws HDF5Exception, HDF5LibraryException, NullPointerException {
|
boolean var7 = true;
|
boolean var8 = false;
|
Class var9 = var5.getClass();
|
if (!var9.isArray()) {
|
throw new HDF5JavaException("H5Dread: data is not an array");
|
} else {
|
String var10 = var9.getName();
|
var8 = var10.lastIndexOf(91) == var10.indexOf(91);
|
char var11 = var10.charAt(var10.lastIndexOf("[") + 1);
|
int var14;
|
if (var8 && var11 == 'B') {
|
var14 = H5Dwrite(var0, var1, var2, var3, var4, (byte[])((byte[])var5), var6);
|
} else if (var8 && var11 == 'S') {
|
var14 = H5Dwrite_short(var0, var1, var2, var3, var4, (short[])((short[])var5), var6);
|
} else if (var8 && var11 == 'I') {
|
var14 = H5Dwrite_int(var0, var1, var2, var3, var4, (int[])((int[])var5), var6);
|
} else if (var8 && var11 == 'J') {
|
var14 = H5Dwrite_long(var0, var1, var2, var3, var4, (long[])((long[])var5), var6);
|
} else if (var8 && var11 == 'F') {
|
var14 = H5Dwrite_float(var0, var1, var2, var3, var4, (float[])((float[])var5), var6);
|
} else if (var8 && var11 == 'D') {
|
var14 = H5Dwrite_double(var0, var1, var2, var3, var4, (double[])((double[])var5), var6);
|
} else if (H5Tget_class(var1) == HDF5Constants.H5T_STRING && H5Tis_variable_str(var1) && var9.isArray() && var9.getComponentType() == String.class && var8) {
|
var14 = H5DwriteString(var0, var1, var2, var3, var4, (String[])((String[])var5));
|
} else {
|
HDFArray var12 = new HDFArray(var5);
|
byte[] var13 = var12.byteify();
|
var14 = H5Dwrite(var0, var1, var2, var3, var4, var13, var6);
|
Object var15 = null;
|
var12 = null;
|
}
|
|
return var14;
|
}
|
}
|
|
public static synchronized native int H5Dwrite_double(int var0, int var1, int var2, int var3, int var4, double[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dwrite_double(int var0, int var1, int var2, int var3, int var4, double[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dwrite_double(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5Dwrite_float(int var0, int var1, int var2, int var3, int var4, float[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dwrite_float(int var0, int var1, int var2, int var3, int var4, float[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dwrite_float(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5Dwrite_int(int var0, int var1, int var2, int var3, int var4, int[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dwrite_int(int var0, int var1, int var2, int var3, int var4, int[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dwrite_int(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5Dwrite_long(int var0, int var1, int var2, int var3, int var4, long[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dwrite_long(int var0, int var1, int var2, int var3, int var4, long[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dwrite_long(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5Dwrite_short(int var0, int var1, int var2, int var3, int var4, short[] var5, boolean var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Dwrite_short(int var0, int var1, int var2, int var3, int var4, short[] var5) throws HDF5LibraryException, NullPointerException {
|
return H5Dwrite_short(var0, var1, var2, var3, var4, var5, true);
|
}
|
|
public static synchronized native int H5DwriteString(int var0, int var1, int var2, int var3, int var4, String[] var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Eauto_is_v2(int var0) throws HDF5LibraryException;
|
|
public static int H5Eclear() throws HDF5LibraryException {
|
H5Eclear2(HDF5Constants.H5E_DEFAULT);
|
return 0;
|
}
|
|
public static void H5Eclear(int var0) throws HDF5LibraryException {
|
H5Eclear2(var0);
|
}
|
|
public static synchronized native void H5Eclear2(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Eclose_msg(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Eclose_stack(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Ecreate_msg(int var0, int var1, String var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Ecreate_stack() throws HDF5LibraryException;
|
|
public static synchronized native String H5Eget_class_name(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Eget_current_stack() throws HDF5LibraryException;
|
|
public static synchronized native void H5Eset_current_stack(int var0) throws HDF5LibraryException;
|
|
public static synchronized native String H5Eget_msg(int var0, int[] var1) throws HDF5LibraryException;
|
|
public static synchronized native long H5Eget_num(int var0) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native void H5Eprint1(Object var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Eprint2(int var0, Object var1) throws HDF5LibraryException;
|
|
public static synchronized native void H5Epop(int var0, long var1) throws HDF5LibraryException;
|
|
public static void H5Epush(int var0, String var1, String var2, int var3, int var4, int var5, int var6, String var7) throws HDF5LibraryException, NullPointerException {
|
H5Epush2(var0, var1, var2, var3, var4, var5, var6, var7);
|
}
|
|
public static synchronized native void H5Epush2(int var0, String var1, String var2, int var3, int var4, int var5, int var6, String var7) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Eregister_class(String var0, String var1, String var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Eunregister_class(int var0) throws HDF5LibraryException;
|
|
public static void H5Ewalk(int var0, int var1, H5E_walk_cb var2, H5E_walk_t var3) throws HDF5LibraryException, NullPointerException {
|
H5Ewalk2(var0, var1, var2, var3);
|
}
|
|
public static synchronized native void H5Ewalk2(int var0, int var1, H5E_walk_cb var2, H5E_walk_t var3) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Fclose(int var0) throws HDF5LibraryException {
|
if (var0 < 0) {
|
return 0;
|
} else {
|
log.trace("OPEN_IDS: H5Fclose remove {}", var0);
|
OPEN_IDS.remove(var0);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
return _H5Fclose(var0);
|
}
|
}
|
|
private static synchronized native int _H5Fclose(int var0) throws HDF5LibraryException;
|
|
public static int H5Fopen(String var0, int var1, int var2) throws HDF5LibraryException, NullPointerException {
|
int var3 = _H5Fopen(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Fopen add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Fopen(String var0, int var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Freopen(int var0) throws HDF5LibraryException {
|
int var1 = _H5Freopen(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Freopen add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Freopen(int var0) throws HDF5LibraryException;
|
|
public static int H5Fcreate(String var0, int var1, int var2, int var3) throws HDF5LibraryException, NullPointerException {
|
int var4 = _H5Fcreate(var0, var1, var2, var3);
|
if (var4 > 0) {
|
log.trace("OPEN_IDS: H5Fcreate add {}", var4);
|
OPEN_IDS.add(var4);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var4;
|
}
|
|
private static synchronized native int _H5Fcreate(String var0, int var1, int var2, int var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Fflush(int var0, int var1) throws HDF5LibraryException;
|
|
public static int H5Fget_access_plist(int var0) throws HDF5LibraryException {
|
int var1 = _H5Fget_access_plist(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Fget_access_plist add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Fget_access_plist(int var0) throws HDF5LibraryException;
|
|
public static int H5Fget_create_plist(int var0) throws HDF5LibraryException {
|
int var1 = _H5Fget_create_plist(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Fget_create_plist add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Fget_create_plist(int var0) throws HDF5LibraryException;
|
|
public static synchronized native long H5Fget_filesize(int var0) throws HDF5LibraryException;
|
|
public static synchronized native long H5Fget_freespace(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Fget_intent(int var0) throws HDF5LibraryException;
|
|
public static synchronized native double H5Fget_mdc_hit_rate(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Fget_mdc_size(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native String H5Fget_name(int var0) throws HDF5LibraryException;
|
|
public static synchronized native String H5Fget_name(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Fget_obj_count(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native long H5Fget_obj_count_long(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Fget_obj_ids(int var0, int var1, int var2, int[] var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native long H5Fget_obj_ids_long(int var0, int var1, long var2, int[] var4) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Fis_hdf5(String var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Fmount(int var0, String var1, int var2, int var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Funmount(int var0, String var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Freset_mdc_hit_rate_stats(int var0) throws HDF5LibraryException;
|
|
public static synchronized native H5F_info_t H5Fget_info(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Fclear_elink_file_cache(int var0) throws HDF5LibraryException;
|
|
public static int H5Gclose(int var0) throws HDF5LibraryException {
|
if (var0 < 0) {
|
return 0;
|
} else {
|
log.trace("OPEN_IDS: H5Gclose remove {}", var0);
|
OPEN_IDS.remove(var0);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
return _H5Gclose(var0);
|
}
|
}
|
|
private static synchronized native int _H5Gclose(int var0) throws HDF5LibraryException;
|
|
/** @deprecated */
|
@Deprecated
|
public static int H5Gcreate(int var0, String var1, long var2) throws HDF5LibraryException, NullPointerException {
|
int var4 = _H5Gcreate(var0, var1, var2);
|
if (var4 > 0) {
|
log.trace("OPEN_IDS: H5Gcreate add {}", var4);
|
OPEN_IDS.add(var4);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var4;
|
}
|
|
private static synchronized native int _H5Gcreate(int var0, String var1, long var2) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Gcreate(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException {
|
int var5 = _H5Gcreate2(var0, var1, var2, var3, var4);
|
if (var5 > 0) {
|
log.trace("OPEN_IDS: H5Gcreate add {}", var5);
|
OPEN_IDS.add(var5);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var5;
|
}
|
|
private static synchronized native int _H5Gcreate2(int var0, String var1, int var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Gcreate_anon(int var0, int var1, int var2) throws HDF5LibraryException {
|
int var3 = _H5Gcreate_anon(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Gcreate_anon add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Gcreate_anon(int var0, int var1, int var2) throws HDF5LibraryException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Gget_comment(int var0, String var1, int var2, String[] var3) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Gset_comment(int var0, String var1, String var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Gget_create_plist(int var0) throws HDF5LibraryException;
|
|
public static synchronized native H5G_info_t H5Gget_info(int var0) throws HDF5LibraryException;
|
|
public static synchronized native H5G_info_t H5Gget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native H5G_info_t H5Gget_info_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Gget_linkval(int var0, String var1, int var2, String[] var3) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Gget_num_objs(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Gget_obj_info_all(int var0, String var1, String[] var2, int[] var3, long[] var4) throws HDF5LibraryException, NullPointerException {
|
if (var2 == null) {
|
throw new NullPointerException("H5Gget_obj_info_all(): name array is null");
|
} else {
|
return H5Gget_obj_info_all(var0, var1, var2, var3, (int[])null, (long[])null, var4, HDF5Constants.H5_INDEX_NAME);
|
}
|
}
|
|
public static synchronized int H5Gget_obj_info_all(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, int var6) throws HDF5LibraryException, NullPointerException {
|
return H5Gget_obj_info_full(var0, var1, var2, var3, var4, (long[])null, var5, var6, -1);
|
}
|
|
public static synchronized int H5Gget_obj_info_all(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, long[] var6, int var7) throws HDF5LibraryException, NullPointerException {
|
return H5Gget_obj_info_full(var0, var1, var2, var3, var4, var5, var6, var2.length, var7, -1);
|
}
|
|
public static synchronized int H5Gget_obj_info_full(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, long[] var6, int var7, int var8) throws HDF5LibraryException, NullPointerException {
|
if (var2 == null) {
|
throw new NullPointerException("H5Gget_obj_info_full(): name array is null");
|
} else if (var3 == null) {
|
throw new NullPointerException("H5Gget_obj_info_full(): object type array is null");
|
} else if (var2.length == 0) {
|
throw new HDF5LibraryException("H5Gget_obj_info_full(): array size is zero");
|
} else if (var2.length != var3.length) {
|
throw new HDF5LibraryException("H5Gget_obj_info_full(): name and type array sizes are different");
|
} else {
|
if (var4 == null) {
|
var4 = new int[var3.length];
|
}
|
|
if (var5 == null) {
|
var5 = new long[var6.length];
|
}
|
|
if (var7 < 0) {
|
var7 = HDF5Constants.H5_INDEX_NAME;
|
}
|
|
if (var8 < 0) {
|
var8 = HDF5Constants.H5_ITER_INC;
|
}
|
|
log.trace("H5Gget_obj_info_full: oname_len={}", var2.length);
|
int var9 = H5Gget_obj_info_full(var0, var1, var2, var3, var4, var5, var6, var2.length, var7, var8);
|
|
for(int var10 = 0; var10 < var2.length; ++var10) {
|
log.trace("H5Gget_obj_info_full: oname={}", var2[var10]);
|
}
|
|
return var9;
|
}
|
}
|
|
private static synchronized native int H5Gget_obj_info_full(int var0, String var1, String[] var2, int[] var3, int[] var4, long[] var5, long[] var6, int var7, int var8, int var9) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Gget_obj_info_idx(int var0, String var1, int var2, String[] var3, int[] var4) throws HDF5LibraryException, NullPointerException {
|
long var5 = 4096L;
|
String[] var7 = new String[]{new String("")};
|
int var8 = H5Gopen(var0, var1);
|
long var9 = H5Gget_objname_by_idx(var8, (long)var2, var7, var5);
|
int var11 = H5Gget_objtype_by_idx(var8, (long)var2);
|
var3[0] = new String(var7[0]);
|
var4[0] = var11;
|
int var12 = (new Long(var9)).intValue();
|
return var12;
|
}
|
|
public static synchronized int H5Gget_obj_info_max(int var0, String[] var1, int[] var2, int[] var3, long[] var4, int var5) throws HDF5LibraryException, NullPointerException {
|
if (var1 == null) {
|
throw new NullPointerException("H5Gget_obj_info_max(): name array is null");
|
} else if (var2 == null) {
|
throw new NullPointerException("H5Gget_obj_info_max(): object type array is null");
|
} else if (var3 == null) {
|
throw new NullPointerException("H5Gget_obj_info_max(): link type array is null");
|
} else if (var1.length <= 0) {
|
throw new HDF5LibraryException("H5Gget_obj_info_max(): array size is zero");
|
} else if (var5 <= 0) {
|
throw new HDF5LibraryException("H5Gget_obj_info_max(): maximum array size is zero");
|
} else if (var1.length != var2.length) {
|
throw new HDF5LibraryException("H5Gget_obj_info_max(): name and type array sizes are different");
|
} else {
|
return H5Gget_obj_info_max(var0, var1, var2, var3, var4, var5, var1.length);
|
}
|
}
|
|
private static synchronized native int H5Gget_obj_info_max(int var0, String[] var1, int[] var2, int[] var3, long[] var4, int var5, int var6) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Gget_objinfo(int var0, String var1, boolean var2, long[] var3, long[] var4, int[] var5, long[] var6) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized int H5Gget_objinfo(int var0, String var1, boolean var2, HDF5GroupInfo var3) throws HDF5LibraryException, NullPointerException {
|
boolean var4 = true;
|
long[] var5 = new long[2];
|
long[] var6 = new long[2];
|
int[] var7 = new int[3];
|
long[] var8 = new long[1];
|
int var9 = H5Gget_objinfo(var0, var1, var2, var5, var6, var7, var8);
|
if (var9 >= 0) {
|
var3.setGroupInfo(var5, var6, var7[0], var7[1], var8[0], var7[2]);
|
}
|
|
return var9;
|
}
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native long H5Gget_objname_by_idx(int var0, long var1, String[] var3, long var4) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Gget_objtype_by_idx(int var0, long var1) throws HDF5LibraryException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Glink(int var0, int var1, String var2, String var3) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Glink2(int var0, String var1, int var2, int var3, String var4) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Gunlink(int var0, String var1) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Gmove(int var0, String var1, String var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized long H5Gn_members_long(int var0, String var1) throws HDF5LibraryException, NullPointerException {
|
int var2 = H5Gopen(var0, var1);
|
long var3 = -1L;
|
|
try {
|
H5G_info_t var5 = H5Gget_info(var2);
|
var3 = var5.nlinks;
|
} finally {
|
H5Gclose(var2);
|
}
|
|
return var3;
|
}
|
|
public static synchronized int H5Gn_members(int var0, String var1) throws HDF5LibraryException, NullPointerException {
|
return (int)H5Gn_members_long(var0, var1);
|
}
|
|
/** @deprecated */
|
@Deprecated
|
public static int H5Gopen(int var0, String var1) throws HDF5LibraryException, NullPointerException {
|
int var2 = _H5Gopen(var0, var1);
|
if (var2 > 0) {
|
log.trace("OPEN_IDS: H5G add {}", var2);
|
OPEN_IDS.add(var2);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var2;
|
}
|
|
private static synchronized native int _H5Gopen(int var0, String var1) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Gopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
|
int var3 = _H5Gopen2(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Gopen add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Gopen2(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Iget_file_id(int var0) throws HDF5LibraryException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native long H5Iget_name_long(int var0, String[] var1, long var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native String H5Iget_name(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Iget_ref(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Idec_ref(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Iinc_ref(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Iget_type(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Iget_type_ref(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Idec_type_ref(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Iinc_type_ref(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Inmembers(int var0) throws HDF5LibraryException;
|
|
public static synchronized native boolean H5Iis_valid(int var0) throws HDF5LibraryException;
|
|
public static synchronized native boolean H5Itype_exists(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Iclear_type(int var0, boolean var1) throws HDF5LibraryException;
|
|
public static synchronized native void H5Idestroy_type(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Lcopy(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Lcreate_external(String var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Lcreate_hard(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Lcreate_soft(String var0, int var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Ldelete(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Ldelete_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Lexists(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native H5L_info_t H5Lget_info(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native H5L_info_t H5Lget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native String H5Lget_name_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Lget_val(int var0, String var1, String[] var2, int var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Lget_val_by_idx(int var0, String var1, int var2, int var3, long var4, String[] var6, int var7) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Literate(int var0, int var1, int var2, long var3, H5L_iterate_cb var5, H5L_iterate_t var6) throws HDF5LibraryException;
|
|
public static synchronized native int H5Literate_by_name(int var0, String var1, int var2, int var3, long var4, H5L_iterate_cb var6, H5L_iterate_t var7, int var8) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Lmove(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Lvisit(int var0, int var1, int var2, H5L_iterate_cb var3, H5L_iterate_t var4) throws HDF5LibraryException;
|
|
public static synchronized native int H5Lvisit_by_name(int var0, String var1, int var2, int var3, H5L_iterate_cb var4, H5L_iterate_t var5, int var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Lis_registered(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Lunregister(int var0) throws HDF5LibraryException;
|
|
public static int H5Oclose(int var0) throws HDF5LibraryException {
|
if (var0 < 0) {
|
return 0;
|
} else {
|
log.trace("OPEN_IDS: H5Oclose remove {}", var0);
|
OPEN_IDS.remove(var0);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
return _H5Oclose(var0);
|
}
|
}
|
|
private static synchronized native int _H5Oclose(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Ocopy(int var0, String var1, int var2, String var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native String H5Oget_comment(int var0) throws HDF5LibraryException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native void H5Oset_comment(int var0, String var1) throws HDF5LibraryException;
|
|
public static synchronized native String H5Oget_comment_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native void H5Oset_comment_by_name(int var0, String var1, String var2, int var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native H5O_info_t H5Oget_info(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native H5O_info_t H5Oget_info_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native H5O_info_t H5Oget_info_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Olink(int var0, int var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Oopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
|
int var3 = _H5Oopen(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Oopen add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Oopen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Ovisit(int var0, int var1, int var2, H5O_iterate_cb var3, H5O_iterate_t var4) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Ovisit_by_name(int var0, String var1, int var2, int var3, H5O_iterate_cb var4, H5O_iterate_t var5, int var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Oexists_by_name(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Odecr_refcount(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Oincr_refcount(int var0) throws HDF5LibraryException;
|
|
public static int H5Oopen_by_addr(int var0, long var1) throws HDF5LibraryException {
|
int var3 = _H5Oopen_by_addr(var0, var1);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Oopen_by_addr add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Oopen_by_addr(int var0, long var1) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Oopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException {
|
int var7 = _H5Oopen_by_idx(var0, var1, var2, var3, var4, var6);
|
if (var7 > 0) {
|
log.trace("OPEN_IDS: H5Oopen_by_idx add {}", var7);
|
OPEN_IDS.add(var7);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var7;
|
}
|
|
public static synchronized native int _H5Oopen_by_idx(int var0, String var1, int var2, int var3, long var4, int var6) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native String H5Pget_class_name(int var0) throws HDF5LibraryException;
|
|
public static int H5Pcreate(int var0) throws HDF5LibraryException {
|
int var1 = _H5Pcreate(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Pcreate add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Pcreate(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget(int var0, String var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset(int var0, String var1, int var2) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pexist(int var0, String var1) throws HDF5LibraryException;
|
|
public static synchronized native long H5Pget_size(int var0, String var1) throws HDF5LibraryException;
|
|
public static synchronized native long H5Pget_nprops(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_class(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_class_parent(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pequal(int var0, int var1) throws HDF5LibraryException;
|
|
public static boolean H5P_equal(int var0, int var1) throws HDF5LibraryException {
|
return H5Pequal(var0, var1) == 1;
|
}
|
|
public static synchronized native int H5Pisa_class(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pcopy_prop(int var0, int var1, String var2) throws HDF5LibraryException;
|
|
public static synchronized native int H5Premove(int var0, String var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Punregister(int var0, String var1) throws HDF5LibraryException;
|
|
public static int H5Pclose_class(int var0) throws HDF5LibraryException {
|
if (var0 < 0) {
|
return 0;
|
} else {
|
log.trace("OPEN_IDS: H5Pclose_class remove {}", var0);
|
OPEN_IDS.remove(var0);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
return _H5Pclose_class(var0);
|
}
|
}
|
|
public static synchronized native int _H5Pclose_class(int var0) throws HDF5LibraryException;
|
|
public static int H5Pclose(int var0) throws HDF5LibraryException {
|
if (var0 < 0) {
|
return 0;
|
} else {
|
log.trace("OPEN_IDS: H5Pclose remove {}", var0);
|
OPEN_IDS.remove(var0);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
return _H5Pclose(var0);
|
}
|
}
|
|
private static synchronized native int _H5Pclose(int var0) throws HDF5LibraryException;
|
|
public static int H5Pcopy(int var0) throws HDF5LibraryException {
|
int var1 = _H5Pcopy(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Pcopy add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Pcopy(int var0) throws HDF5LibraryException;
|
|
public static int H5Pcreate_class_nocb(int var0, String var1) throws HDF5LibraryException {
|
int var2 = _H5Pcreate_class_nocb(var0, var1);
|
if (var2 > 0) {
|
log.trace("OPEN_IDS: H5Pcreate_class_nocb add {}", var2);
|
OPEN_IDS.add(var2);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var2;
|
}
|
|
private static synchronized native int _H5Pcreate_class_nocb(int var0, String var1) throws HDF5LibraryException;
|
|
public static synchronized native void H5Pregister2_nocb(int var0, String var1, long var2, byte[] var4) throws HDF5LibraryException;
|
|
public static synchronized native void H5Pinsert2_nocb(int var0, String var1, long var2, byte[] var4) throws HDF5LibraryException;
|
|
public static synchronized native int H5Piterate(int var0, int[] var1, H5P_iterate_cb var2, H5P_iterate_t var3) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_attr_phase_change(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Pset_attr_phase_change(int var0, int var1, int var2) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_attr_creation_order(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_attr_creation_order(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native boolean H5Pget_obj_track_times(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Pset_obj_track_times(int var0, boolean var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pmodify_filter(int var0, int var1, int var2, long var3, int[] var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_filter(int var0, int var1, int var2, long var3, int[] var5) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_nfilters(int var0) throws HDF5LibraryException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Pget_filter(int var0, int var1, int[] var2, int[] var3, int[] var4, int var5, String[] var6) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException;
|
|
public static int H5Pget_filter(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException {
|
return H5Pget_filter2(var0, var1, var2, var3, var4, var5, var7, var8);
|
}
|
|
private static synchronized native int H5Pget_filter2(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Pget_filter_by_id(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Pget_filter_by_id(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException {
|
return H5Pget_filter_by_id2(var0, var1, var2, var3, var4, var5, var7, var8);
|
}
|
|
public static synchronized native int H5Pget_filter_by_id2(int var0, int var1, int[] var2, long[] var3, int[] var4, long var5, String[] var7, int[] var8) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Pall_filters_avail(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Premove_filter(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_deflate(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_fletcher32(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pget_userblock(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_userblock(int var0, long var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_sizes(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native int H5Pset_sizes(int var0, int var1, int var2) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_sym_k(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native int H5Pset_sym_k(int var0, int var1, int var2) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_istore_k(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_istore_k(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_shared_mesg_nindexes(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_shared_mesg_nindexes(int var0, int var1) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pget_shared_mesg_index(int var0, int var1, int[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native int H5Pset_shared_mesg_index(int var0, int var1, int var2, int var3) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pget_shared_mesg_phase_change(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_shared_mesg_phase_change(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pget_alignment(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native int H5Pset_alignment(int var0, long var1, long var3) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_driver(int var0) throws HDF5LibraryException;
|
|
public static synchronized native long H5Pget_family_offset(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_family_offset(int var0, long var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pget_cache(int var0, int[] var1, long[] var2, long[] var3, double[] var4) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static int H5Pget_cache(int var0, int[] var1, int[] var2, int[] var3, double[] var4) throws HDF5LibraryException, NullPointerException {
|
long[] var5 = new long[]{(long)var2[0]};
|
long[] var6 = new long[]{(long)var3[0]};
|
int var7 = H5Pget_cache(var0, var1, var5, var6, var4);
|
var2[0] = (int)var5[0];
|
var3[0] = (int)var6[0];
|
return var7;
|
}
|
|
public static synchronized native int H5Pset_cache(int var0, int var1, long var2, long var4, double var6) throws HDF5LibraryException;
|
|
public static synchronized native H5AC_cache_config_t H5Pget_mdc_config(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Pset_mdc_config(int var0, H5AC_cache_config_t var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_gc_references(int var0, boolean[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Pget_gcreferences(int var0) throws HDF5LibraryException;
|
|
public static synchronized int H5Pget_gc_reference(int var0, boolean[] var1) throws HDF5LibraryException, NullPointerException {
|
return H5Pget_gc_references(var0, var1);
|
}
|
|
public static synchronized native int H5Pset_gc_references(int var0, boolean var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_fclose_degree(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_fclose_degree(int var0, int var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native long H5Pget_meta_block_size(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Pset_meta_block_size(int var0, long var1) throws HDF5LibraryException;
|
|
public static synchronized native long H5Pget_sieve_buf_size(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Pset_sieve_buf_size(int var0, long var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_small_data_block_size(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native long H5Pget_small_data_block_size_long(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_small_data_block_size(int var0, long var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_libver_bounds(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_libver_bounds(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pget_elink_file_cache_size(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Pset_elink_file_cache_size(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_layout(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_layout(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_chunk(int var0, int var1, long[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native int H5Pset_chunk(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized int H5Pset_chunk(int var0, int var1, long[] var2) throws HDF5Exception, NullPointerException, IllegalArgumentException {
|
if (var2 == null) {
|
return -1;
|
} else {
|
HDFArray var3 = new HDFArray(var2);
|
byte[] var4 = var3.byteify();
|
int var5 = H5Pset_chunk(var0, var1, var4);
|
Object var6 = null;
|
var3 = null;
|
return var5;
|
}
|
}
|
|
public static synchronized native int H5Pget_external(int var0, int var1, long var2, String[] var4, long[] var5) throws ArrayIndexOutOfBoundsException, ArrayStoreException, HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native int H5Pset_external(int var0, String var1, long var2, long var4) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pget_external_count(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_szip(int var0, int var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_shuffle(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_nbit(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_scaleoffset(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pget_fill_value(int var0, int var1, byte[] var2) throws HDF5Exception;
|
|
public static synchronized int H5Pget_fill_value(int var0, int var1, Object var2) throws HDF5Exception {
|
HDFArray var3 = new HDFArray(var2);
|
byte[] var4 = var3.emptyBytes();
|
int var5 = H5Pget_fill_value(var0, var1, var4);
|
if (var5 >= 0) {
|
var3.arrayify(var4);
|
}
|
|
return var5;
|
}
|
|
public static synchronized native int H5Pset_fill_value(int var0, int var1, byte[] var2) throws HDF5Exception;
|
|
public static synchronized int H5Pset_fill_value(int var0, int var1, Object var2) throws HDF5Exception {
|
HDFArray var3 = new HDFArray(var2);
|
byte[] var4 = var3.byteify();
|
int var5 = H5Pset_fill_value(var0, var1, var4);
|
Object var6 = null;
|
var3 = null;
|
return var5;
|
}
|
|
public static synchronized native int H5Pfill_value_defined(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pget_alloc_time(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_alloc_time(int var0, int var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pget_fill_time(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_fill_time(int var0, int var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Pget_chunk_cache(int var0, long[] var1, long[] var2, double[] var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Pset_chunk_cache(int var0, long var1, long var3, double var5) throws HDF5LibraryException;
|
|
public static synchronized native long H5Pget_data_transform(int var0, String[] var1, long var2) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pset_data_transform(int var0, String var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pget_buffer(int var0, byte[] var1, byte[] var2) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native long H5Pget_buffer_size(int var0) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native void H5Pset_buffer_size(int var0, long var1) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pget_edc_check(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_edc_check(int var0, int var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pget_btree_ratios(int var0, double[] var1, double[] var2, double[] var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_btree_ratios(int var0, double var1, double var3, double var5) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_hyper_vector_size(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_hyper_vector_size(int var0, long var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Pget_create_intermediate_group(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_create_intermediate_group(int var0, boolean var1) throws HDF5LibraryException;
|
|
public static synchronized native long H5Pget_local_heap_size_hint(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_local_heap_size_hint(int var0, long var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_link_phase_change(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_link_phase_change(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pget_est_link_info(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_est_link_info(int var0, int var1, int var2) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pget_link_creation_order(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_link_creation_order(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_char_encoding(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Pset_char_encoding(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native long H5Pget_nlinks(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_nlinks(int var0, long var1) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native long H5Pget_elink_prefix(int var0, String[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_elink_prefix(int var0, String var1) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Pget_elink_fapl(int var0) throws HDF5LibraryException {
|
int var1 = _H5Pget_elink_fapl(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Pget_elink_fapl add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Pget_elink_fapl(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_elink_fapl(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_elink_acc_flags(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_elink_acc_flags(int var0, int var1) throws HDF5LibraryException, IllegalArgumentException;
|
|
public static synchronized native int H5Pget_copy_object(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Pset_copy_object(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_version(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native void H5Pget_fapl_core(int var0, long[] var1, boolean[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_fapl_core(int var0, long var1, boolean var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pget_fapl_direct(int var0, long[] var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pset_fapl_direct(int var0, long var1, long var3, long var5) throws HDF5LibraryException;
|
|
public static synchronized native int H5Pget_fapl_family(int var0, long[] var1, int[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_fapl_family(int var0, long var1, int var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Pget_fapl_multi(int var0, int[] var1, int[] var2, String[] var3, long[] var4) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Pset_fapl_multi(int var0, int[] var1, int[] var2, String[] var3, long[] var4, boolean var5) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Pget_preserve(int var0) throws HDF5LibraryException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Pset_preserve(int var0, boolean var1) throws HDF5LibraryException, IllegalArgumentException;
|
|
/** @deprecated */
|
@Deprecated
|
public static int H5Pset_fapl_log(int var0, String var1, int var2, int var3) throws HDF5LibraryException, NullPointerException {
|
H5Pset_fapl_log(var0, var1, (long)var2, (long)var3);
|
return 1;
|
}
|
|
public static synchronized native void H5Pset_fapl_log(int var0, String var1, long var2, long var4) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_fapl_sec2(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Pset_fapl_split(int var0, String var1, int var2, String var3, int var4) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_fapl_stdio(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Pset_fapl_windows(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5PLset_loading_state(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5PLget_loading_state() throws HDF5LibraryException;
|
|
private static synchronized native int H5Rcreate(byte[] var0, int var1, String var2, int var3, int var4) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized byte[] H5Rcreate(int var0, String var1, int var2, int var3) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
|
byte var4 = 8;
|
if (var2 == HDF5Constants.H5R_DATASET_REGION) {
|
var4 = 12;
|
}
|
|
byte[] var5 = new byte[var4];
|
H5Rcreate(var5, var0, var1, var2, var3);
|
return var5;
|
}
|
|
public static int H5Rdereference(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
|
int var3 = _H5Rdereference(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Rdereference add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Rdereference(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native long H5Rget_name(int var0, int var1, byte[] var2, String[] var3, long var4) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Rget_obj_type(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static int H5Rget_obj_type(int var0, int var1, byte[] var2, int[] var3) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
|
return H5Rget_obj_type2(var0, var1, var2, var3);
|
}
|
|
private static synchronized native int H5Rget_obj_type2(int var0, int var1, byte[] var2, int[] var3) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static int H5Rget_region(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
|
int var3 = _H5Rget_region(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Rget_region add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Rget_region(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static int H5Sclose(int var0) throws HDF5LibraryException {
|
if (var0 < 0) {
|
return 0;
|
} else {
|
log.trace("OPEN_IDS: H5Sclose remove {}", var0);
|
OPEN_IDS.remove(var0);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
return _H5Sclose(var0);
|
}
|
}
|
|
private static synchronized native int _H5Sclose(int var0) throws HDF5LibraryException;
|
|
public static int H5Scopy(int var0) throws HDF5LibraryException {
|
int var1 = _H5Scopy(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Scopy add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Scopy(int var0) throws HDF5LibraryException;
|
|
public static int H5Screate(int var0) throws HDF5LibraryException {
|
int var1 = _H5Screate(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Screate add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Screate(int var0) throws HDF5LibraryException;
|
|
public static int H5Screate_simple(int var0, long[] var1, long[] var2) throws HDF5Exception, NullPointerException {
|
int var3 = _H5Screate_simple(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Screate_simple add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Screate_simple(int var0, long[] var1, long[] var2) throws HDF5Exception, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static int H5Screate_simple(int var0, byte[] var1, byte[] var2) throws HDF5Exception, NullPointerException {
|
ByteBuffer var3 = ByteBuffer.wrap(var1);
|
long[] var4 = var3.asLongBuffer().array();
|
ByteBuffer var5 = ByteBuffer.wrap(var2);
|
long[] var6 = var5.asLongBuffer().array();
|
int var7 = _H5Screate_simple(var0, var4, var6);
|
if (var7 > 0) {
|
log.trace("OPEN_IDS: H5S add {}", var7);
|
OPEN_IDS.add(var7);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var7;
|
}
|
|
public static synchronized native int H5Sdecode(byte[] var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native byte[] H5Sencode(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Sextent_copy(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native boolean H5Sextent_equal(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Sget_select_bounds(int var0, long[] var1, long[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native long H5Sget_select_elem_npoints(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Sget_select_elem_pointlist(int var0, long var1, long var3, long[] var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Sget_select_hyper_blocklist(int var0, long var1, long var3, long[] var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native long H5Sget_select_hyper_nblocks(int var0) throws HDF5LibraryException;
|
|
public static synchronized native long H5Sget_select_npoints(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Sget_select_type(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Sget_simple_extent_dims(int var0, long[] var1, long[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Sget_simple_extent_ndims(int var0) throws HDF5LibraryException;
|
|
public static synchronized native long H5Sget_simple_extent_npoints(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Sget_simple_extent_type(int var0) throws HDF5LibraryException;
|
|
public static synchronized native boolean H5Sis_simple(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Soffset_simple(int var0, byte[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Soffset_simple(int var0, long[] var1) throws HDF5Exception, NullPointerException {
|
if (var1 == null) {
|
return -1;
|
} else {
|
HDFArray var2 = new HDFArray(var1);
|
byte[] var3 = var2.byteify();
|
int var4 = H5Soffset_simple(var0, var3);
|
Object var5 = null;
|
var2 = null;
|
return var4;
|
}
|
}
|
|
public static synchronized native int H5Sselect_all(int var0) throws HDF5LibraryException;
|
|
private static synchronized native int H5Sselect_elements(int var0, int var1, int var2, byte[] var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Sselect_elements(int var0, int var1, int var2, long[][] var3) throws HDF5Exception, HDF5LibraryException, NullPointerException {
|
if (var3 == null) {
|
return -1;
|
} else {
|
HDFArray var4 = new HDFArray(var3);
|
byte[] var5 = var4.byteify();
|
int var6 = H5Sselect_elements(var0, var1, var2, var5);
|
Object var7 = null;
|
var4 = null;
|
return var6;
|
}
|
}
|
|
public static synchronized int H5Sselect_hyperslab(int var0, int var1, byte[] var2, byte[] var3, byte[] var4, byte[] var5) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
|
ByteBuffer var6 = ByteBuffer.wrap(var2);
|
long[] var7 = var6.asLongBuffer().array();
|
ByteBuffer var8 = ByteBuffer.wrap(var3);
|
long[] var9 = var8.asLongBuffer().array();
|
ByteBuffer var10 = ByteBuffer.wrap(var4);
|
long[] var11 = var10.asLongBuffer().array();
|
ByteBuffer var12 = ByteBuffer.wrap(var5);
|
long[] var13 = var12.asLongBuffer().array();
|
return H5Sselect_hyperslab(var0, var1, var7, var9, var11, var13);
|
}
|
|
public static synchronized native int H5Sselect_hyperslab(int var0, int var1, long[] var2, long[] var3, long[] var4, long[] var5) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native int H5Sselect_none(int var0) throws HDF5LibraryException;
|
|
public static synchronized native boolean H5Sselect_valid(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Sset_extent_none(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Sset_extent_simple(int var0, int var1, long[] var2, long[] var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Sset_extent_simple(int var0, int var1, byte[] var2, byte[] var3) throws HDF5LibraryException, NullPointerException {
|
ByteBuffer var4 = ByteBuffer.wrap(var2);
|
long[] var5 = var4.asLongBuffer().array();
|
ByteBuffer var6 = ByteBuffer.wrap(var3);
|
long[] var7 = var6.asLongBuffer().array();
|
return H5Sset_extent_simple(var0, var1, var5, var7);
|
}
|
|
/** @deprecated */
|
@Deprecated
|
public static int H5Tarray_create(int var0, int var1, int[] var2, int[] var3) throws HDF5LibraryException, NullPointerException {
|
int var4 = _H5Tarray_create(var0, var1, var2, var3);
|
if (var4 > 0) {
|
log.trace("OPEN_IDS: H5T add {}", var4);
|
OPEN_IDS.add(var4);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var4;
|
}
|
|
private static synchronized native int _H5Tarray_create(int var0, int var1, int[] var2, int[] var3) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Tarray_create(int var0, int var1, long[] var2) throws HDF5LibraryException, NullPointerException {
|
int var3 = _H5Tarray_create2(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Tarray_create add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Tarray_create2(int var0, int var1, long[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Tclose(int var0) throws HDF5LibraryException {
|
if (var0 < 0) {
|
return 0;
|
} else {
|
log.trace("OPEN_IDS: H5Tclose remove {}", var0);
|
OPEN_IDS.remove(var0);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
return _H5Tclose(var0);
|
}
|
}
|
|
private static synchronized native int _H5Tclose(int var0) throws HDF5LibraryException;
|
|
/** @deprecated */
|
@Deprecated
|
public static int H5Tcommit(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
|
return H5Tcommit1(var0, var1, var2);
|
}
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Tcommit1(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Tcommit(int var0, String var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Tcommit_anon(int var0, int var1, int var2, int var3) throws HDF5LibraryException;
|
|
public static synchronized native boolean H5Tcommitted(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Tcompiler_conv(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native void H5Tconvert(int var0, int var1, long var2, byte[] var4, byte[] var5, int var6) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Tcopy(int var0) throws HDF5LibraryException {
|
int var1 = _H5Tcopy(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Tcopy add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Tcopy(int var0) throws HDF5LibraryException;
|
|
public static int H5Tcreate(int var0, int var1) throws HDF5LibraryException {
|
return H5Tcreate(var0, (long)var1);
|
}
|
|
public static int H5Tcreate(int var0, long var1) throws HDF5LibraryException {
|
int var3 = _H5Tcreate(var0, var1);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Tcreate add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Tcreate(int var0, long var1) throws HDF5LibraryException;
|
|
public static int H5Tdecode(byte[] var0) throws HDF5LibraryException, NullPointerException {
|
int var1 = _H5Tdecode(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Tdecode add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Tdecode(byte[] var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Tdetect_class(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tencode(int var0, byte[] var1, long var2) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Tenum_create(int var0) throws HDF5LibraryException {
|
int var1 = _H5Tenum_create(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Tenum_create add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Tenum_create(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Tenum_insert(int var0, String var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Tenum_insert(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException {
|
return H5Tenum_insert_int(var0, var1, var2);
|
}
|
|
public static int H5Tenum_insert(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
|
int[] var3 = new int[]{var2};
|
return H5Tenum_insert_int(var0, var1, var3);
|
}
|
|
private static synchronized native int H5Tenum_insert_int(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native String H5Tenum_nameof(int var0, byte[] var1, long var2) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Tenum_nameof(int var0, int[] var1, String[] var2, int var3) throws HDF5LibraryException, NullPointerException {
|
return H5Tenum_nameof_int(var0, var1, var2, var3);
|
}
|
|
private static synchronized native int H5Tenum_nameof_int(int var0, int[] var1, String[] var2, int var3) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native void H5Tenum_valueof(int var0, String var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Tenum_valueof(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException {
|
return H5Tenum_valueof_int(var0, var1, var2);
|
}
|
|
private static synchronized native int H5Tenum_valueof_int(int var0, String var1, int[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native boolean H5Tequal(int var0, int var1) throws HDF5LibraryException;
|
|
/** @deprecated */
|
@Deprecated
|
public static synchronized native int H5Tget_array_dims(int var0, int[] var1, int[] var2) throws HDF5LibraryException, NullPointerException;
|
|
/** @deprecated */
|
@Deprecated
|
public static int H5Tget_array_dims(int var0, long[] var1, int[] var2) throws HDF5LibraryException, NullPointerException {
|
return H5Tget_array_dims1(var0, var1, var2);
|
}
|
|
/** @deprecated */
|
@Deprecated
|
private static synchronized native int H5Tget_array_dims1(int var0, long[] var1, int[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Tget_array_dims(int var0, long[] var1) throws HDF5LibraryException, NullPointerException {
|
return H5Tget_array_dims2(var0, var1);
|
}
|
|
public static synchronized native int H5Tget_array_dims2(int var0, long[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Tget_array_ndims(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_class(int var0) throws HDF5LibraryException;
|
|
public static String H5Tget_class_name(int var0) {
|
String var1 = null;
|
if (HDF5Constants.H5T_INTEGER == var0) {
|
var1 = "H5T_INTEGER";
|
} else if (HDF5Constants.H5T_FLOAT == var0) {
|
var1 = "H5T_FLOAT";
|
} else if (HDF5Constants.H5T_TIME == var0) {
|
var1 = "H5T_TIME";
|
} else if (HDF5Constants.H5T_STRING == var0) {
|
var1 = "H5T_STRING";
|
} else if (HDF5Constants.H5T_BITFIELD == var0) {
|
var1 = "H5T_BITFIELD";
|
} else if (HDF5Constants.H5T_OPAQUE == var0) {
|
var1 = "H5T_OPAQUE";
|
} else if (HDF5Constants.H5T_COMPOUND == var0) {
|
var1 = "H5T_COMPOUND";
|
} else if (HDF5Constants.H5T_REFERENCE == var0) {
|
var1 = "H5T_REFERENCE";
|
} else if (HDF5Constants.H5T_ENUM == var0) {
|
var1 = "H5T_ENUM";
|
} else if (HDF5Constants.H5T_VLEN == var0) {
|
var1 = "H5T_VLEN";
|
} else if (HDF5Constants.H5T_ARRAY == var0) {
|
var1 = "H5T_ARRAY";
|
} else {
|
var1 = "H5T_NO_CLASS";
|
}
|
|
return var1;
|
}
|
|
public static int H5Tget_create_plist(int var0) throws HDF5LibraryException {
|
int var1 = _H5Tget_create_plist(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: _H5Tget_create_plist add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Tget_create_plist(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_cset(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tset_cset(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_ebias(int var0) throws HDF5LibraryException;
|
|
public static int H5Tset_ebias(int var0, int var1) throws HDF5LibraryException {
|
H5Tset_ebias(var0, (long)var1);
|
return 0;
|
}
|
|
public static synchronized native long H5Tget_ebias_long(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Tset_ebias(int var0, long var1) throws HDF5LibraryException;
|
|
public static synchronized native void H5Tget_fields(int var0, long[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static int H5Tget_fields(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException {
|
return H5Tget_fields_int(var0, var1);
|
}
|
|
private static synchronized native int H5Tget_fields_int(int var0, int[] var1) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
|
|
public static synchronized native void H5Tset_fields(int var0, long var1, long var3, long var5, long var7, long var9) throws HDF5LibraryException;
|
|
public static int H5Tset_fields(int var0, int var1, int var2, int var3, int var4, int var5) throws HDF5LibraryException {
|
H5Tset_fields(var0, (long)var1, (long)var2, (long)var3, (long)var4, (long)var5);
|
return 0;
|
}
|
|
public static synchronized native int H5Tget_inpad(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tset_inpad(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_member_class(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_member_index(int var0, String var1);
|
|
public static synchronized native String H5Tget_member_name(int var0, int var1);
|
|
public static synchronized native long H5Tget_member_offset(int var0, int var1) throws HDF5LibraryException;
|
|
public static int H5Tget_member_type(int var0, int var1) throws HDF5LibraryException {
|
int var2 = _H5Tget_member_type(var0, var1);
|
if (var2 > 0) {
|
log.trace("OPEN_IDS: H5Tget_member_type add {}", var2);
|
OPEN_IDS.add(var2);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var2;
|
}
|
|
private static synchronized native int _H5Tget_member_type(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native void H5Tget_member_value(int var0, int var1, byte[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static int H5Tget_member_value(int var0, int var1, int[] var2) throws HDF5LibraryException, NullPointerException {
|
return H5Tget_member_value_int(var0, var1, var2);
|
}
|
|
private static synchronized native int H5Tget_member_value_int(int var0, int var1, int[] var2) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized int H5Tget_native_type(int var0) throws HDF5LibraryException {
|
return H5Tget_native_type(var0, HDF5Constants.H5T_DIR_ASCEND);
|
}
|
|
public static int H5Tget_native_type(int var0, int var1) throws HDF5LibraryException {
|
int var2 = _H5Tget_native_type(var0, var1);
|
if (var2 > 0) {
|
log.trace("OPEN_IDS: H5Tget_native_type add {}", var2);
|
OPEN_IDS.add(var2);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var2;
|
}
|
|
private static synchronized native int _H5Tget_native_type(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_nmembers(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_norm(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tset_norm(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_offset(int var0) throws HDF5LibraryException;
|
|
public static int H5Tset_offset(int var0, int var1) throws HDF5LibraryException {
|
H5Tset_offset(var0, (long)var1);
|
return 0;
|
}
|
|
public static synchronized native void H5Tset_offset(int var0, long var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_order(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tset_order(int var0, int var1) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_pad(int var0, int[] var1) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Tset_pad(int var0, int var1, int var2) throws HDF5LibraryException;
|
|
public static synchronized native int H5Tget_precision(int var0) throws HDF5LibraryException;
|
|
public static int H5Tset_precision(int var0, int var1) throws HDF5LibraryException {
|
H5Tset_precision(var0, (long)var1);
|
return 0;
|
}
|
|
public static synchronized native long H5Tget_precision_long(int var0) throws HDF5LibraryException;
|
|
public static synchronized native void H5Tset_precision(int var0, long var1) throws HDF5LibraryException;
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public static synchronized native int H5Tget_sign(int var0) throws HDF5LibraryException;
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public static synchronized native int H5Tset_sign(int var0, int var1) throws HDF5LibraryException;
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public static synchronized native int H5Tget_size(int var0) throws HDF5LibraryException;
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public static int H5Tset_size(int var0, int var1) throws HDF5LibraryException {
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H5Tset_size(var0, (long)var1);
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return 0;
|
}
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public static synchronized native long H5Tget_size_long(int var0) throws HDF5LibraryException;
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public static synchronized native void H5Tset_size(int var0, long var1) throws HDF5LibraryException;
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public static synchronized native int H5Tget_strpad(int var0) throws HDF5LibraryException;
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public static synchronized native int H5Tset_strpad(int var0, int var1) throws HDF5LibraryException;
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public static int H5Tget_super(int var0) throws HDF5LibraryException {
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int var1 = _H5Tget_super(var0);
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if (var1 > 0) {
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log.trace("OPEN_IDS: H5Tget_super add {}", var1);
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OPEN_IDS.add(var1);
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log.trace("OPEN_IDS: {}", OPEN_IDS.size());
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}
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|
return var1;
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}
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private static synchronized native int _H5Tget_super(int var0) throws HDF5LibraryException;
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public static synchronized native String H5Tget_tag(int var0) throws HDF5LibraryException;
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public static synchronized native int H5Tset_tag(int var0, String var1) throws HDF5LibraryException;
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public static synchronized native int H5Tinsert(int var0, String var1, long var2, int var4) throws HDF5LibraryException, NullPointerException;
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public static synchronized native boolean H5Tis_variable_str(int var0) throws HDF5LibraryException;
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public static synchronized native int H5Tlock(int var0) throws HDF5LibraryException;
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|
/** @deprecated */
|
@Deprecated
|
public static int H5Topen(int var0, String var1) throws HDF5LibraryException, NullPointerException {
|
int var2 = _H5Topen(var0, var1);
|
if (var2 > 0) {
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log.trace("OPEN_IDS: H5Topen add {}", var2);
|
OPEN_IDS.add(var2);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var2;
|
}
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|
private static synchronized native int _H5Topen(int var0, String var1) throws HDF5LibraryException, NullPointerException;
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|
public static int H5Topen(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException {
|
int var3 = _H5Topen2(var0, var1, var2);
|
if (var3 > 0) {
|
log.trace("OPEN_IDS: H5Topen add {}", var3);
|
OPEN_IDS.add(var3);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var3;
|
}
|
|
private static synchronized native int _H5Topen2(int var0, String var1, int var2) throws HDF5LibraryException, NullPointerException;
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|
public static synchronized native int H5Tpack(int var0) throws HDF5LibraryException;
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|
public static int H5Tvlen_create(int var0) throws HDF5LibraryException {
|
int var1 = _H5Tvlen_create(var0);
|
if (var1 > 0) {
|
log.trace("OPEN_IDS: H5Tvlen_create add {}", var1);
|
OPEN_IDS.add(var1);
|
log.trace("OPEN_IDS: {}", OPEN_IDS.size());
|
}
|
|
return var1;
|
}
|
|
private static synchronized native int _H5Tvlen_create(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Zfilter_avail(int var0) throws HDF5LibraryException, NullPointerException;
|
|
public static synchronized native int H5Zget_filter_info(int var0) throws HDF5LibraryException;
|
|
public static synchronized native int H5Zunregister(int var0) throws HDF5LibraryException, NullPointerException;
|
|
static {
|
loadH5Lib();
|
}
|
}
|
